ENSDARG00000079752


Danio rerio

Features
Gene ID: ENSDARG00000079752
  
Biological name :col6a4a
  
Synonyms : col6a4a / collagen, type VI, alpha 4a
  
Possible biological names infered from orthology : A2AX52 / Col6a4 / Collagen alpha-4(VI) chain
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 36650984
Gene end: 36719705
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000103549
Ensembl peptide - ENSDARP00000128796
swissprot - F1Q924
swissprot - X1WEZ4
ZFIN ID - ZDB-GENE-041111-303
Ensembl - ENSDARG00000079752
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 A2AX52ENSMUSG00000032572Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
col6a3 / collagen, type VI, alpha 3 / P12111* / collagen type VI alpha 3 chain*ENSDARG0000007713930
si:ch211-62a1.3 / COL6A5* / COL6A6* / A6NMZ7* / A8TX70* / Q8C6K9* / Collagen alpha-6(VI) chain * / collagen type VI alpha 5 chain* / collagen type VI alpha 6 chain*ENSDARG0000011241928
col7a1 / collagen, type VII, alpha 1 / Q63870* / Q02388* / Collagen alpha-1(VII) chain * / collagen type VII alpha 1 chain*ENSDARG0000002172015
col12a1b / collagen, type XII, alpha 1b / Q99715* / Q60847* / COL12A1* / Collagen alpha-1(XII) chain * / collagen type XII alpha 1 chain*ENSDARG0000001960113
col14a1a / collagen, type XIV, alpha 1a / Q80X19* / Q05707* / COL14A1* / Collagen alpha-1(XIV) chain * / collagen type XIV alpha 1 chain*ENSDARG0000000576212
col12a1a / collagen, type XII, alpha 1a / Q99715* / Q60847* / COL12A1* / Collagen alpha-1(XII) chain * / collagen type XII alpha 1 chain*ENSDARG0000007832212
col7a1l / collagen type VII alpha 1-likeENSDARG0000006969211
vwa2 / von Willebrand factor A domain containing 2 / Q5GFL6* / Q70UZ7*ENSDARG000000754416
col6a3 / collagen, type VI, alpha 3 / P12111* / collagen type VI alpha 3 chain*ENSDARG000000959156
ch1073-291c23.1 / VIT* / Q6UXI7* / Q8VHI5* / vitrin*ENSDARG000000636315
coch / coagulation factor C homolog, cochlin (Limulus polyphemus) / O43405* / Q62507* / cochlin*ENSDARG000000240324
col14a1b / collagen, type XIV, alpha 1b / Q80X19* / Q05707* / COL14A1* / Collagen alpha-1(XIV) chain * / collagen type XIV alpha 1 chain*ENSDARG000000766234


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR002223  Pancreatic trypsin inhibitor Kunitz domain
 IPR008160  Collagen triple helix repeat
 IPR020901  Proteinase inhibitor I2, Kunitz, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007409 axonogenesis IMP
 biological_processGO:0007517 muscle organ development IMP
 biological_processGO:0010951 negative regulation of endopeptidase activity IEA
 molecular_functionGO:0004867 serine-type endopeptidase inhibitor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000155 somite somite myofibril loose , abnormal
Show

 ZFA:0000610 vertical myoseptum vertical myoseptum U-shaped , abnormal
vertical myoseptum morphology , abnormal
Show

 ZFA:0001056 myotome myotome compartment boundary morphology , abnormal
Show

 ZFA:0001089 myoseptum myoseptum morphology , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased length , abnormal
whole organism decreased amount , abnormal
whole organism refractivity , abnormal
whole organism decreased pigmentation , abnormal
Show

 ZFA:0001115 trunk trunk bent , abnormal
Show

 ZFA:0009052 motor neuron motor neuron axon decreased length , abnormal
Show

 ZFA:0009114 muscle cell muscle cell vacuolated , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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