ENSMUSG00000032572


Mus musculus
vonwillebrandfactorcollagenproteinCol6a4typetriplehelixrepeatinsectcysteine-richantifreezea-likedomainsuperfamilycelladhesionheterotrimerizationextracellularregiontrimermolecularfunction

Features
Gene ID: ENSMUSG00000032572
  
Biological name :Col6a4
  
Synonyms : A2AX52 / Col6a4 / Collagen alpha-4(VI) chain
  
Possible biological names infered from orthology :
  
Species: Mus musculus
  
Chr. number: 9
Strand: -1
Band: F1
Gene start: 105989454
Gene end: 106096783
  
Corresponding Affymetrix probe sets: 10596428 (MoGene1.0st)   1429072_at (Mouse Genome 430 2.0 Array)   1445470_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000112472
Ensembl peptide - ENSMUSP00000151299
NCBI entrez gene - 68553     See in Manteia.
MGI - MGI:1915803
RefSeq - NM_026763
RefSeq Peptide - NP_081039
swissprot - A2AX52
swissprot - A0A1W2P6K8
Ensembl - ENSMUSG00000032572
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col6a4aENSDARG00000079752Danio rerio


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Col6a6 / Q8C6K9 / Collagen alpha-6(VI) chain / A6NMZ7* / collagen type VI alpha 6 chain*ENSMUSG0000004371931
Col6a5 / collagen type VI alpha 5 chain / A8TX70*ENSMUSG0000009134530
Col6a3 / collagen, type VI, alpha 3 / P12111* / collagen type VI alpha 3 chain*ENSMUSG0000004812627
Col7a1 / Q63870 / Collagen alpha-1(VII) chain / Q02388* / collagen type VII alpha 1 chain*ENSMUSG0000002565016
Q60847 / Col12a1 / Collagen alpha-1(XII) chain / Q99715* / collagen type XII alpha 1 chain*ENSMUSG0000003233216
Q80X19 / Col14a1 / Collagen alpha-1(XIV) chain / Q05707* / collagen type XIV alpha 1 chain*ENSMUSG0000002237113
Q923P0 / Col20a1 / Collagen alpha-1(XX) chain / Q9P218* / collagen type XX alpha 1 chain*ENSMUSG000000163569
Vit / Q8VHI5 / vitrin / Q6UXI7*ENSMUSG000000240767
Coch / Q62507 / Cochlin / O43405*ENSMUSG000000209536
Vwa2 / Q70UZ7 / von Willebrand factor A domain containing 2 / Q5GFL6*ENSMUSG000000250826


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR008160  Collagen triple helix repeat
 IPR016133  Insect cysteine-rich antifreeze protein
 IPR036465  von Willebrand factor A-like domain superfamily


Gene Ontology (GO)
cell adhesioncellular component organizationcellular component biogenesiscell adhesioncellular component organizationcellular component biogenesiscell adhesioncellular component organizationcellular component biogenesiscell adhesioncellular component organizationcellular component biogenesiscell adhesioncellular component organizationcellular component biogenesiscell adhesioncellular component organizationcellular component biogenesiscell adhesioncellular component organizationcellular component biogenesiscell adhesioncellular component organizationcellular component biogenesiscell adhesioncellular component organizationcellular component biogenesiscell adhesioncellular component organizationcellular component biogenesiscell adhesioncell adhesioncellular component organizationcellular component organizationcellular component biogenesiscellular component biogenesis
extracellular regionprotein-containing complexextracellular regionprotein-containing complexextracellular regionprotein-containing complexextracellular regionprotein-containing complexextracellular regionprotein-containing complexextracellular regionprotein-containing complexextracellular regionprotein-containing complexextracellular regionprotein-containing complexextracellular regionprotein-containing complexextracellular regionprotein-containing complexextracellular regionextracellular regionprotein-containing complexprotein-containing complex
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0070208 protein heterotrimerization IDA
 cellular_componentGO:0005576 extracellular region IDA
 cellular_componentGO:0005581 collagen trimer IEA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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