ENSMUSG00000016356


Mus musculus

Features
Gene ID: ENSMUSG00000016356
  
Biological name :Col20a1
  
Synonyms : Col20a1 / Collagen alpha-1(XX) chain / Q923P0
  
Possible biological names infered from orthology : collagen type XX alpha 1 chain / Q9P218
  
Species: Mus musculus
  
Chr. number: 2
Strand: 1
Band: H4
Gene start: 180986535
Gene end: 181018363
  
Corresponding Affymetrix probe sets: 10479514 (MoGene1.0st)   1425234_at (Mouse Genome 430 2.0 Array)   1425235_s_at (Mouse Genome 430 2.0 Array)   1425236_at (Mouse Genome 430 2.0 Array)   1430855_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000115291
Ensembl peptide - ENSMUSP00000104484
Ensembl peptide - ENSMUSP00000114654
Ensembl peptide - ENSMUSP00000117514
Ensembl peptide - ENSMUSP00000153871
NCBI entrez gene - 73368     See in Manteia.
MGI - MGI:1920618
RefSeq - XM_017319288
RefSeq - NM_028518
RefSeq - XM_006500727
RefSeq - XM_017319287
RefSeq Peptide - NP_082794
swissprot - Q923P0
swissprot - F6ZZM4
swissprot - F6ZXI1
swissprot - F6UFI2
Ensembl - ENSMUSG00000016356
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COL20A1ENSGALG00000005797Gallus gallus
 Q9P218ENSG00000101203Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q80X19 / Col14a1 / Collagen alpha-1(XIV) chain / Q05707* / collagen type XIV alpha 1 chain*ENSMUSG0000002237136
Q60847 / Col12a1 / Collagen alpha-1(XII) chain / Q99715* / collagen type XII alpha 1 chain*ENSMUSG0000003233235
Col7a1 / Q63870 / Collagen alpha-1(VII) chain / Q02388* / collagen type VII alpha 1 chain*ENSMUSG0000002565027
A2AX52 / Col6a4 / Collagen alpha-4(VI) chain ENSMUSG0000003257216
Col6a3 / collagen, type VI, alpha 3 / P12111* / collagen type VI alpha 3 chain*ENSMUSG0000004812615
Col6a6 / Q8C6K9 / Collagen alpha-6(VI) chain / A6NMZ7* / collagen type VI alpha 6 chain*ENSMUSG0000004371914
Col6a5 / collagen type VI alpha 5 chain / A8TX70*ENSMUSG0000009134514
Vwa2 / Q70UZ7 / von Willebrand factor A domain containing 2 / Q5GFL6*ENSMUSG0000002508210
Vit / Q8VHI5 / vitrin / Q6UXI7*ENSMUSG000000240763
Coch / Q62507 / Cochlin / O43405*ENSMUSG000000209532


Protein motifs (from Interpro)
Interpro ID Name
 IPR001791  Laminin G domain
 IPR002035  von Willebrand factor, type A
 IPR003961  Fibronectin type III
 IPR008160  Collagen triple helix repeat
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR013783  Immunoglobulin-like fold
 IPR016133  Insect cysteine-rich antifreeze protein
 IPR036116  Fibronectin type III superfamily
 IPR036465  von Willebrand factor A-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005615 extracellular space IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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