ENSDARG00000073757


Danio rerio

Features
Gene ID: ENSDARG00000073757
  
Biological name :pdzrn3a
  
Synonyms : PDZ domain containing RING finger 3a / pdzrn3a
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase PDZRN3 / PDZ domain containing ring finger 3 / PDZRN3 / Q69ZS0 / Q9UPQ7
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 10828716
Gene end: 10914275
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000100414
Ensembl peptide - ENSDARP00000122882
swissprot - E7FGS6
swissprot - F1QQQ2
ZFIN ID - ZDB-GENE-090313-307
Ensembl - ENSDARG00000073757
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PDZRN3ENSGALG00000007819Gallus gallus
 PDZRN3ENSG00000121440Homo sapiens
 Pdzrn3ENSMUSG00000035357Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
E7FDW2 / pdzrn3b / PDZ domain containing RING finger 3b / Q9UPQ7* / PDZRN3* / Q69ZS0* / E3 ubiquitin-protein ligase PDZRN3 * / PDZ domain containing ring finger 3*ENSDARG0000007386954
pdzrn4 / PDZ domain containing ring finger 4 / Q6ZMN7*ENSDARG0000004568726
PDZD4 / si:ch73-162j3.4 / Q76G19* / Q9QY39* / PDZ domain containing 4* / PDZ domain-containing protein 4 *ENSDARG0000009056423
CT583651.2 / PDZD4* / Q76G19* / PDZ domain containing 4*ENSDARG0000009882323


Protein motifs (from Interpro)
Interpro ID Name
 IPR001293  Zinc finger, TRAF-type
 IPR001478  PDZ domain
 IPR001841  Zinc finger, RING-type
 IPR003613  U box domain
 IPR008974  TRAF-like
 IPR013010  Zinc finger, SIAH-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007528 neuromuscular junction development IBA
 biological_processGO:0016567 protein ubiquitination IEA
 cellular_componentGO:0031594 neuromuscular junction IBA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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