ENSDARG00000073869


Danio rerio

Features
Gene ID: ENSDARG00000073869
  
Biological name :pdzrn3b
  
Synonyms : E7FDW2 / PDZ domain containing RING finger 3b / pdzrn3b
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase PDZRN3 / PDZ domain containing ring finger 3 / PDZRN3 / Q69ZS0 / Q9UPQ7
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 44243070
Gene end: 44402358
  
Corresponding Affymetrix probe sets: Dr.5264.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000101938
Ensembl peptide - ENSDARP00000145553
Ensembl peptide - ENSDARP00000154894
swissprot - E7FDW2
ZFIN ID - ZDB-GENE-071022-4
Ensembl - ENSDARG00000073869
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PDZRN3ENSGALG00000007819Gallus gallus
 PDZRN3ENSG00000121440Homo sapiens
 Pdzrn3ENSMUSG00000035357Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pdzrn3a / PDZ domain containing RING finger 3a / Q9UPQ7* / PDZRN3* / Q69ZS0* / E3 ubiquitin-protein ligase PDZRN3 * / PDZ domain containing ring finger 3*ENSDARG0000007375752
pdzrn4 / PDZ domain containing ring finger 4 / Q6ZMN7*ENSDARG0000004568732
CT583651.2 / PDZD4* / Q76G19* / PDZ domain containing 4*ENSDARG0000009882330
PDZD4 / si:ch73-162j3.4 / Q76G19* / Q9QY39* / PDZ domain containing 4* / PDZ domain-containing protein 4 *ENSDARG0000009056429


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR001841  Zinc finger, RING-type
 IPR003613  U box domain
 IPR008974  TRAF-like
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007528 neuromuscular junction development IBA
 biological_processGO:0016567 protein ubiquitination IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0031594 neuromuscular junction IBA
 cellular_componentGO:0045202 synapse IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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