ENSDARG00000075732


Danio rerio

Features
Gene ID: ENSDARG00000075732
  
Biological name :taf4b
  
Synonyms : taf4b / TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor
  
Possible biological names infered from orthology : G5E8Z2 / Q92750 / TATA-box binding protein associated factor 4b / Transcription initiation factor TFIID subunit 4B
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 18260358
Gene end: 18296294
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000151789
Ensembl peptide - ENSDARP00000057038
Ensembl peptide - ENSDARP00000148028
NCBI entrez gene - 100150678     See in Manteia.
RefSeq - XM_017352723
swissprot - F1QMF8
ZFIN ID - ZDB-GENE-070424-105
Ensembl - ENSDARG00000075732
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TAF4BENSGALG00000015122Gallus gallus
 TAF4BENSG00000141384Homo sapiens
 Taf4bENSMUSG00000054321Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
taf4a / TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor / TAF4* / O00268* / TATA-box binding protein associated factor 4*ENSDARG0000006819233
si:dkey-219c3.2ENSDARG0000007580533


Protein motifs (from Interpro)
Interpro ID Name
 IPR003894  TAFH/NHR1
 IPR007900  Transcription initiation factor TFIID component TAF4
 IPR009072  Histone-fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006352 DNA-templated transcription, initiation IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 biological_processGO:0051123 RNA polymerase II transcriptional preinitiation complex assembly IEA
 cellular_componentGO:0005669 transcription factor TFIID complex IBA
 molecular_functionGO:0001075 transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly IBA
 molecular_functionGO:0003677 DNA binding IBA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003713 transcription coactivator activity IBA
 molecular_functionGO:0008134 transcription factor binding IBA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase II Pre-transcription Events
Regulation of TP53 Activity through Phosphorylation
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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