ENSGALG00000015122


Gallus gallus

Features
Gene ID: ENSGALG00000015122
  
Biological name :TAF4B
  
Synonyms : TAF4B / TATA-box binding protein associated factor 4b
  
Possible biological names infered from orthology : G5E8Z2 / Q92750 / Transcription initiation factor TFIID subunit 4B
  
Species: Gallus gallus
  
Chr. number: 2
Strand: 1
Band:
Gene start: 104463654
Gene end: 104519187
  
Corresponding Affymetrix probe sets: GgaAffx.9611.1.S1_at (Chicken Array)   GgaAffx.9611.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000024358
NCBI entrez gene - 421086     See in Manteia.
RefSeq - XM_015277993
RefSeq - XM_015277994
RefSeq - XM_419170
swissprot - F1NK10
Ensembl - ENSGALG00000015122
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 taf4bENSDARG00000075732Danio rerio
 TAF4BENSG00000141384Homo sapiens
 Taf4bENSMUSG00000054321Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TAF4 / TATA-box binding protein associated factor 4 / O00268*ENSGALG0000000512141
ENSGALG0000004072537


Protein motifs (from Interpro)
Interpro ID Name
 IPR003894  TAFH/NHR1
 IPR007900  Transcription initiation factor TFIID component TAF4
 IPR009072  Histone-fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006352 DNA-templated transcription, initiation IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 biological_processGO:0051123 RNA polymerase II transcriptional preinitiation complex assembly IEA
 biological_processGO:2000648 positive regulation of stem cell proliferation IEA
 cellular_componentGO:0001650 fibrillar center IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005669 transcription factor TFIID complex IBA
 molecular_functionGO:0001075 transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly IBA
 molecular_functionGO:0003677 DNA binding IBA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003713 transcription coactivator activity IBA
 molecular_functionGO:0008134 transcription factor binding IBA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase II Pre-transcription Events
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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