ENSDARG00000079840


Danio rerio

Features
Gene ID: ENSDARG00000079840
  
Biological name :kcnma1a
  
Synonyms : kcnma1a / potassium large conductance calcium-activated channel, subfamily M, alpha member 1a
  
Possible biological names infered from orthology : KCNMA1 / potassium calcium-activated channel subfamily M alpha 1 / potassium large conductance calcium-activated channel, subfamily M, alpha member 1 / Q12791
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 16521898
Gene end: 16886118
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000155995
Ensembl peptide - ENSDARP00000105964
Ensembl peptide - ENSDARP00000118939
NCBI entrez gene - 568554     See in Manteia.
RefSeq - XM_005156668
RefSeq - XM_017358783
RefSeq - XM_017358784
RefSeq - XM_017358785
RefSeq - XM_021480642
RefSeq - NM_001145600
RefSeq - XM_005156670
RefSeq - XM_005156671
RefSeq Peptide - NP_001139072
swissprot - F1QYL4
swissprot - B7ZC96
ZFIN ID - ZDB-GENE-070202-9
Ensembl - ENSDARG00000079840
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 KCNMA1ENSGALG00000004980Gallus gallus
 KCNMA1ENSG00000156113Homo sapiens
 Kcnma1ENSMUSG00000063142Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CABZ01092907.1 / KCNMA1* / Q12791* / potassium calcium-activated channel subfamily M alpha 1* / potassium large conductance calcium-activated channel, subfamily M, alpha member 1*ENSDARG0000011072738
si:dkey-21e5.1ENSDARG0000010486819
kcnt2 / potassium channel, subfamily T, member 2 / Q6UVM3* / potassium sodium-activated channel subfamily T member 2*ENSDARG0000007581218
kcnt1 / potassium channel, subfamily T, member 1ENSDARG0000007948418
CR392045.1ENSDARG0000011306418


Protein motifs (from Interpro)
Interpro ID Name
 IPR003929  Potassium channel, BK, alpha subunit
 IPR005821  Ion transport domain
 IPR016040  NAD(P)-binding domain
 IPR024939  Calcium-activated potassium channel Slo-1
 IPR028325  Voltage-gated potassium channel


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006813 potassium ion transport IEA
 biological_processGO:0010996 response to auditory stimulus IMP
 biological_processGO:0034765 regulation of ion transmembrane transport IEA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0071805 potassium ion transmembrane transport IEA
 cellular_componentGO:0008076 voltage-gated potassium channel complex IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005244 voltage-gated ion channel activity IEA
 molecular_functionGO:0005249 voltage-gated potassium channel activity IEA
 molecular_functionGO:0005267 potassium channel activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0060072 large conductance calcium-activated potassium channel activity IBA


Pathways (from Reactome)
Pathway description
Ca2+ activated K+ channels


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000001712 si:ch211-247n2.1 / KCNMB2* / Q9Y691* / Q9CZM9* / KCNMB1* / Q16558* / AC117457.1* / Calcium-activated potassium channel subunit beta-2 * / potassium calcium-activated channel subfamily M reg...  / complex
 ENSDARG00000063129 si:ch211-38m6.7 / KCNMB3* / Q9NPA1* / potassium calcium-activated channel subfamily M regulatory beta subunit 3*  / complex
 ENSDARG00000079840 kcnma1a / potassium large conductance calcium-activated channel, subfamily M, alpha member 1a / KCNMA1* / Q12791* / potassium calcium-activated channel subfamily M alpha 1* / potassium larg...  / complex






 

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