ENSDARG00000087897


Danio rerio

Features
Gene ID: ENSDARG00000087897
  
Biological name :h2afy2
  
Synonyms : h2afy2 / H2A histone family, member Y2
  
Possible biological names infered from orthology : Core histone macro-H2A.2 / Q8CCK0 / Q9P0M6
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 7753049
Gene end: 7767600
  
Corresponding Affymetrix probe sets: Dr.25598.1.A1_at (Zebrafish Array)   NM_001025502_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000105230
Ensembl peptide - ENSDARP00000141526
Ensembl peptide - ENSDARP00000141394
Ensembl peptide - ENSDARP00000131192
NCBI entrez gene - 558711     See in Manteia.
RefSeq - NM_001025502
RefSeq Peptide - NP_001020673
swissprot - A0A0R4IXR3
swissprot - A0A0R4IAE9
swissprot - A0A0R4IZ93
swissprot - Q4V914
ZFIN ID - ZDB-GENE-050913-114
Ensembl - ENSDARG00000087897
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 H2AFY2ENSGALG00000004794Gallus gallus
 H2AFY2ENSG00000099284Homo sapiens
 H2afy2ENSMUSG00000020086Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
h2afy / H2A histone family, member Y / O75367*ENSDARG0000009932961
h2afx1 / H2A histone family member X1 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000006899523
hist1h2a3 / hist1h2a2 / histone cluster 1 H2A family member 3 / H2AFX* / P27661* / P16104* / Histone H2AX * / H2A histone family member X*ENSDARG0000007028023
si:ch1073-153i20.5 / H2AFX* / P27661* / P16104* / Histone H2AX * / H2A histone family member X*ENSDARG0000010547823
hist1h2a1 / histone cluster 1 H2A family member1 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000010945823
hist1h2a2 / histone cluster 1 H2A family member 2 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000010975523
hist1h2a2 / histone cluster 1 H2A family member 2 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000011080923
hist1h2a2 / histone cluster 1 H2A family member 2 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000011164823
hist1h2a2 / histone cluster 1 H2A family member 2 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000011259323
h2afx / Q7ZUY3 / H2A histone family, member X / P16104* / P27661* / Histone H2AX *ENSDARG0000002940622
hist1h2a4 / histone cluster 1 H2A family member 4 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000005173622
hist1h2a11 / histone cluster 1 H2A family member 11 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000008655222
hist1h2a11 / histone cluster 1 H2A family member 11 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000008868622
hist1h2a11 / histone cluster 1 H2A family member 11 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000009859522
hist1h2a4 / histone cluster 1 H2A family member 4 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000009912322
FP340257.1 / H2AFX* / P27661* / P16104* / Histone H2AX * / H2A histone family member X*ENSDARG0000010002422
CU457819.1 / H2AFX* / P27661* / P16104* / Histone H2AX * / H2A histone family member X*ENSDARG0000010027922
hist1h2a11 / histone cluster 1 H2A family member 11 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000010090622
hist1h2a4 / histone cluster 1 H2A family member 4 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000010301522
hist1h2a4 / histone cluster 1 H2A family member 4 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000010531422


Protein motifs (from Interpro)
Interpro ID Name
 IPR002119  Histone H2A
 IPR002589  Macro domain
 IPR007125  Histone H2A/H2B/H3
 IPR009072  Histone-fold
 IPR021171  Core histone macro-H2A
 IPR032454  Histone H2A, C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006334 nucleosome assembly IEA
 biological_processGO:0006342 chromatin silencing IBA
 biological_processGO:0007420 brain development IMP
 cellular_componentGO:0000786 nucleosome IEA
 cellular_componentGO:0000790 nuclear chromatin IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0031490 chromatin DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IDA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001032 rhombomere 4 rhombomere 4 decreased size , abnormal
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 ZFA:0001094 whole organism whole organism curved dorsal , abnormal
Show

 ZFA:0007047 midbrain hindbrain boundary neural tube midbrain hindbrain boundary neural tube cleft , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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