ENSDARG00000099329


Danio rerio

Features
Gene ID: ENSDARG00000099329
  
Biological name :h2afy
  
Synonyms : h2afy / H2A histone family, member Y
  
Possible biological names infered from orthology : Core histone macro-H2A.1 / O75367 / Q9QZQ8
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 45757317
Gene end: 45769763
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000139864
Ensembl peptide - ENSDARP00000135218
NCBI entrez gene - 678613     See in Manteia.
RefSeq - NM_001040361
RefSeq Peptide - NP_001035451
swissprot - A0A0R4IX65
swissprot - Q1RLR9
ZFIN ID - ZDB-GENE-060421-4796
Ensembl - ENSDARG00000099329
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 H2AFYENSGALG00000040141Gallus gallus
 H2AFYENSG00000113648Homo sapiens
 H2afyENSMUSG00000015937Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
h2afy2 / H2A histone family, member Y2 / Q8CCK0* / Q9P0M6* / Core histone macro-H2A.2 *ENSDARG0000008789763
h2afx / Q7ZUY3 / H2A histone family, member X / P16104* / P27661* / Histone H2AX *ENSDARG0000002940623
hist1h2a4 / histone cluster 1 H2A family member 4 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000005173622
h2afx1 / H2A histone family member X1 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000006899522
hist1h2a3 / hist1h2a2 / histone cluster 1 H2A family member 3 / H2AFX* / P27661* / P16104* / Histone H2AX * / H2A histone family member X*ENSDARG0000007028022
hist1h2a11 / histone cluster 1 H2A family member 11 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000008655222
hist1h2a11 / histone cluster 1 H2A family member 11 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000008868622
hist1h2a11 / histone cluster 1 H2A family member 11 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000009859522
hist1h2a4 / histone cluster 1 H2A family member 4 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000009912322
FP340257.1 / H2AFX* / P27661* / P16104* / Histone H2AX * / H2A histone family member X*ENSDARG0000010002422
CU457819.1 / H2AFX* / P27661* / P16104* / Histone H2AX * / H2A histone family member X*ENSDARG0000010027922
hist1h2a11 / histone cluster 1 H2A family member 11 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000010090622
hist1h2a4 / histone cluster 1 H2A family member 4 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000010301522
hist1h2a4 / histone cluster 1 H2A family member 4 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000010531422
hist1h2a10 / histone cluster 1 H2A family member 10 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000010536622
hist1h2a4 / histone cluster 1 H2A family member 4 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000010540022
hist1h2a11 / histone cluster 1 H2A family member 11 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000010544422
si:ch1073-153i20.5 / H2AFX* / P27661* / P16104* / Histone H2AX * / H2A histone family member X*ENSDARG0000010547822
hist1h2a1 / histone cluster 1 H2A family member1 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000010945822
hist1h2a2 / histone cluster 1 H2A family member 2 / H2AFX* / P16104* / P27661* / Histone H2AX * / H2A histone family member X*ENSDARG0000010975522


Protein motifs (from Interpro)
Interpro ID Name
 IPR002119  Histone H2A
 IPR002589  Macro domain
 IPR007125  Histone H2A/H2B/H3
 IPR009072  Histone-fold
 IPR021171  Core histone macro-H2A
 IPR032454  Histone H2A, C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006334 nucleosome assembly IEA
 biological_processGO:0006342 chromatin silencing IBA
 biological_processGO:0031060 regulation of histone methylation IBA
 cellular_componentGO:0000786 nucleosome IEA
 cellular_componentGO:0000790 nuclear chromatin IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 molecular_functionGO:0003677 DNA binding IBA
 molecular_functionGO:0031490 chromatin DNA binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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