ENSDARG00000088347


Danio rerio

Features
Gene ID: ENSDARG00000088347
  
Biological name :sp1
  
Synonyms : sp1 / sp1 transcription factor
  
Possible biological names infered from orthology : O89090 / P08047 / Transcription factor Sp1
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 19668
Gene end: 28747
  
Corresponding Affymetrix probe sets: Dr.9235.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000133402
Ensembl peptide - ENSDARP00000142393
Ensembl peptide - ENSDARP00000142306
Ensembl peptide - ENSDARP00000142153
Ensembl peptide - ENSDARP00000142099
Ensembl peptide - ENSDARP00000141953
Ensembl peptide - ENSDARP00000141561
Ensembl peptide - ENSDARP00000139533
Ensembl peptide - ENSDARP00000110200
NCBI entrez gene - 324109     See in Manteia.
swissprot - A0A140LGL4
swissprot - A0A140LFX7
swissprot - A0A140LFS5
swissprot - A0A0R4IYX5
swissprot - A0A0R4IXH4
swissprot - A0A0R4IH77
swissprot - A0A0J9YJM3
swissprot - F1QW97
ZFIN ID - ZDB-GENE-030131-2829
Ensembl - ENSDARG00000088347
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SP1ENSGALG00000035487Gallus gallus
 SP1ENSG00000185591Homo sapiens
 Sp1ENSMUSG00000001280Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sp4 / sp4 transcription factor / Q02446*ENSDARG0000000518637
sp3a / sp3a transcription factor / SP3* / Q02447* / O70494* / Sp3 transcription factor* / Transcription factor Sp3 *ENSDARG0000000154932
sp3b / Sp3b transcription factor / SP3* / Q02447* / O70494* / Sp3 transcription factor* / Transcription factor Sp3 *ENSDARG0000000781228
sp2 / sp2 transcription factor / Q02086*ENSDARG0000007676325
sp9 / Q6NW96 / sp9 transcription factor / Q64HY3* / P0CG40* / Transcription factor Sp9 *ENSDARG0000009937421
FO704755.1ENSDARG0000000584619
sp8a / sp8 transcription factor a / SP8* / Q8IXZ3* / Q8BMJ8* / Sp8 transcription factor* / Transcription factor Sp8 *ENSDARG0000001187019
sp7 / Sp7 transcription factor / Q8TDD2* / Q8VI67* / Mus musculus Sp7 transcription factor 7 (Sp7), transcript variant 2, mRNA.*ENSDARG0000001951619
sp8b / Q6P0J3 / sp8 transcription factor bENSDARG0000005666619
sp5a / Sp5 transcription factor a / SP5* / Q9JHX2* / Q6BEB4* / Sp5 transcription factor* / Transcription factor Sp5 *ENSDARG0000007657119
sp5l / Sp5 transcription factor-like / SP5* / Q6BEB4* / Sp5 transcription factor*ENSDARG0000011586818
klf11b / Kruppel-like factor 11b / KLF11* / Q8K1S5* / O14901* / Kruppel like factor 11* / Krueppel-like factor 11 *ENSDARG0000001379415
klf11a / Kruppel-like factor 11a / KLF11* / Q8K1S5* / O14901* / Kruppel like factor 11* / Krueppel-like factor 11 *ENSDARG0000003084414
sp6 / Sp6 transcription factor / Q3SY56* / Q9ESX2* / trans-acting transcription factor 6*ENSDARG0000009988014
klf13 / Kruppel-like factor 13 / Q9JJZ6* / Q9Y2Y9* / Krueppel-like factor 13 *ENSDARG0000006136811
klf9 / Kruppel-like factor 9 / Q13886*ENSDARG0000006819410
zgc:153115ENSDARG0000006934210


Protein motifs (from Interpro)
Interpro ID Name
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription
RNA polymerase II transcribes snRNA genes
Estrogen-dependent gene expression


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr