ENSDARG00000088552


Danio rerio
zinccxbindingfingercchc-typedwnndomainknuckleghxcnucleusnucleicacidion

Features
Gene ID: ENSDARG00000088552
  
Biological name :si:dkey-23f9.13
  
Synonyms : si:dkey-23f9.13
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 11419186
Gene end: 11421106
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000131279
Ensembl peptide - ENSDARP00000109866
NCBI entrez gene - 100537805     See in Manteia.
NCBI entrez gene - 110438889     See in Manteia.
NCBI entrez gene - 100004335     See in Manteia.
NCBI entrez gene - 100537627     See in Manteia.
RefSeq - XM_021474666
RefSeq - XM_021479764
RefSeq - XM_021472415
RefSeq - XM_021472440
RefSeq - XM_021474628
swissprot - E7FCA1
swissprot - A0A0R4IC83
ZFIN ID - ZDB-GENE-141216-15
Ensembl - ENSDARG00000088552
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkey-23f9.12ENSDARG0000009433599
si:ch211-156l18.6ENSDARG0000007081298
zgc:174353ENSDARG0000011236598
zgc:174354ENSDARG0000011399498
CR450764.1ENSDARG0000010075493
zgc:174354ENSDARG0000011182693
zgc:174353ENSDARG0000011507993
si:dkey-27d5.6ENSDARG0000011059192
zgc:174355ENSDARG0000011388992
si:dkey-27d5.10ENSDARG0000009419690
si:rp71-45g20.10ENSDARG0000005690781
si:rp71-45g20.11ENSDARG0000009429181
si:rp71-45g20.4ENSDARG0000005691780
rbbp6 / retinoblastoma binding protein 6 / Q7Z6E9* / P97868* / E3 ubiquitin-protein ligase RBBP6 * / RB binding protein 6, ubiquitin ligase*ENSDARG0000003791952
si:dkey-23f9.9ENSDARG0000011652152
zgc:174353ENSDARG0000007747551
si:dkey-23f9.7ENSDARG0000011056451
si:dkey-27d5.3ENSDARG0000011124551
FO904934.1ENSDARG0000011244351
si:dkey-23f9.8ENSDARG0000011265451


Protein motifs (from Interpro)
Interpro ID Name
 IPR001878  Zinc finger, CCHC-type
 IPR014891  DWNN domain
 IPR025829  Zinc knuckle CX2CX3GHX4C


Gene Ontology (GO)
organic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingheterocyclic compound bindingion bindingion binding
cellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellcellorganelleorganelle
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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