ENSDARG00000088801


Danio rerio

Features
Gene ID: ENSDARG00000088801
  
Biological name :fgd5a
  
Synonyms : fgd5a / FYVE, RhoGEF and PH domain containing 5a
  
Possible biological names infered from orthology : FGD5 / FYVE, RhoGEF and PH domain containing 5 / Q6ZNL6
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 18395879
Gene end: 18468570
  
Corresponding Affymetrix probe sets: Dr.14553.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000128376
Ensembl peptide - ENSDARP00000153260
NCBI entrez gene - 100151562     See in Manteia.
swissprot - X1WDS7
ZFIN ID - ZDB-GENE-090428-3
Ensembl - ENSDARG00000088801
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FGD5ENSGALG00000008546Gallus gallus
 FGD5ENSG00000154783Homo sapiens
 Fgd5ENSMUSG00000034037Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
fgd6 / FYVE, RhoGEF and PH domain containing 6 / Q69ZL1* / Q6ZV73* / FYVE, RhoGEF and PH domain-containing protein 6 *ENSDARG0000004552820
fgd5b / FYVE, RhoGEF and PH domain containing 5b / FGD5* / Q6ZNL6* / FYVE, RhoGEF and PH domain containing 5*ENSDARG0000008962217
fgd1 / FYVE, RhoGEF and PH domain containing 1 / P52734* / P98174* / FYVE, RhoGEF and PH domain-containing protein 1 *ENSDARG0000010040212
fgd4b / FYVE, RhoGEF and PH domain containing 4b / FGD4* / Q96M96* / FYVE, RhoGEF and PH domain containing 4*ENSDARG0000006024811
fgd4a / FYVE, RhoGEF and PH domain containing 4a / FGD4* / Q91ZT5* / Q96M96* / FYVE, RhoGEF and PH domain containing 4* / FYVE, RhoGEF and PH domain-containing protein 4 *ENSDARG0000010147110
CABZ01079663.1 / FGD3* / Q5JSP0* / FYVE, RhoGEF and PH domain containing 3*ENSDARG000000996507
Q7ZUV1 / plekhf2 / pleckstrin homology domain containing, family F (with FYVE domain) member 2 / Q91WB4* / Q9H8W4* / pleckstrin homology and FYVE domain containing 2* / Pleckstrin homology ...ENSDARG000000211415
plekhf1 / pleckstrin homology domain containing, family F (with FYVE domain) member 1 / Q3TB82* / Q96S99* / pleckstrin homology and FYVE domain containing 1* / Pleckstrin homology domain-co...ENSDARG000001024354


Protein motifs (from Interpro)
Interpro ID Name
 IPR000219  Dbl homology (DH) domain
 IPR000306  FYVE zinc finger
 IPR001849  Pleckstrin homology domain
 IPR011993  PH-like domain superfamily
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017455  Zinc finger, FYVE-related


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0035023 regulation of Rho protein signal transduction IEA
 biological_processGO:0065009 regulation of molecular function IEA
 molecular_functionGO:0005089 Rho guanyl-nucleotide exchange factor activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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