ENSDARG00000089458


Danio rerio

Features
Gene ID: ENSDARG00000089458
  
Biological name :rp1l1a
  
Synonyms : retinitis pigmentosa 1-like 1a / rp1l1a
  
Possible biological names infered from orthology : Q8CGM2 / retinitis pigmentosa 1 homolog like 1 / RP1L1 / RP1 like 1
  
Species: Danio rerio
  
Chr. number: 17
Strand: 1
Band:
Gene start: 5768608
Gene end: 5822120
  
Corresponding Affymetrix probe sets: Dr.12929.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000127535
Ensembl peptide - ENSDARP00000144143
Ensembl peptide - ENSDARP00000129546
NCBI entrez gene - 101882236     See in Manteia.
RefSeq - XM_005169808
RefSeq - XM_005169809
RefSeq - XM_009292786
swissprot - E7F630
swissprot - A0A286YAD5
swissprot - X1WH37
ZFIN ID - ZDB-GENE-120711-1
Ensembl - ENSDARG00000089458
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000028138Gallus gallus
 RP1L1ENSG00000183638Homo sapiens
 Rp1l1ENSMUSG00000046049Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rp1l1b / retinitis pigmentosa 1-like 1b / RP1L1* / Q8CGM2* / RP1 like 1* / retinitis pigmentosa 1 homolog like 1*ENSDARG0000008837730
dcdc2b / doublecortin domain containing 2B / A2VCK2*ENSDARG000000537444
rp1 / retinitis pigmentosa 1 (autosomal dominant) / P56716* / P56715* / Oxygen-regulated protein 1 * / RP1, axonemal microtubule associated*ENSDARG000000776874
DCDC2C / si:dkey-25g12.4 / A8MYV0* / Q9D1B8* / doublecortin domain containing 2C* / Doublecortin domain-containing protein 2C *ENSDARG000001032643


Protein motifs (from Interpro)
Interpro ID Name
 IPR003533  Doublecortin domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0021549 cerebellum development IMP
 biological_processGO:0035082 axoneme assembly IBA
 biological_processGO:0035556 intracellular signal transduction IEA
 biological_processGO:0042461 photoreceptor cell development IBA
 biological_processGO:0060026 convergent extension IMP
 biological_processGO:0060041 retina development in camera-type eye IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005930 axoneme IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000100 cerebellum cerebellum shape , exacerbated
cerebellum size , exacerbated
cerebellum morphology , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
eye decreased size , exacerbated
Show

 ZFA:0000152 retina retina decreased distribution , abnormal
retina absent , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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