ENSDARG00000091658


Danio rerio

Features
Gene ID: ENSDARG00000091658
  
Biological name :sptssb
  
Synonyms : Q1RLT2 / serine palmitoyltransferase, small subunit B / sptssb
  
Possible biological names infered from orthology : Q8NFR3 / Q925E8
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 1679962
Gene end: 1687204
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000127984
Ensembl peptide - ENSDARP00000154838
NCBI entrez gene - 678546     See in Manteia.
RefSeq - NM_001302808
RefSeq - NM_001159833
RefSeq Peptide - NP_001153305
RefSeq Peptide - NP_001289737
swissprot - Q1RLT2
ZFIN ID - ZDB-GENE-060421-6887
Ensembl - ENSDARG00000091658
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000026131Gallus gallus
 SPTSSBENSGALG00000027494Gallus gallus
 Q8NFR3ENSG00000196542Homo sapiens
 Q925E8ENSMUSG00000043461Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q5BJC1 / sptssa / serine palmitoyltransferase, small subunit A / Q8R207* / Gm6993* / Q969W0*ENSDARG0000007120339


Protein motifs (from Interpro)
Interpro ID Name
 IPR024512  Small subunit of serine palmitoyltransferase-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0006665 sphingolipid metabolic process IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0017059 serine C-palmitoyltransferase complex ISS
 molecular_functionGO:0004758 serine C-palmitoyltransferase activity ISS


Pathways (from Reactome)
Pathway description
Sphingolipid de novo biosynthesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000030743 sptlc3 / serine palmitoyltransferase, long chain base subunit 3 / Q8BG54* / Q9NUV7* / Mus musculus serine palmitoyltransferase, long chain base subunit 3 (Sptlc3), transcript variant 1, mRNA.*  / complex
 ENSDARG00000042995 sptlc1 / serine palmitoyltransferase, long chain base subunit 1 / O15269* / O35704* / Serine palmitoyltransferase 1 *  / complex






 

1 s.

 
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