ENSDARG00000093999


Danio rerio

Features
Gene ID: ENSDARG00000093999
  
Biological name :si:ch73-376l24.6
  
Synonyms : si:ch73-376l24.6
  
Possible biological names infered from orthology : Q15361 / Q62187 / transcription termination factor 1 / transcription termination factor, RNA polymerase I / TTF1
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 63375386
Gene end: 63387138
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000121645
Ensembl peptide - ENSDARP00000157472
NCBI entrez gene - 100334190     See in Manteia.
RefSeq - XM_009301927
RefSeq - XM_009301929
RefSeq - XM_017356385
RefSeq - XM_009301928
swissprot - F1R591
ZFIN ID - ZDB-GENE-100921-87
Ensembl - ENSDARG00000093999
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000027242Gallus gallus
 TTF1ENSG00000125482Homo sapiens
 Ttf1ENSMUSG00000026803Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ttf1 / transcription termination factor, RNA polymerase I / Q15361* / Q62187* / transcription termination factor 1*ENSDARG0000009196763
si:ch73-376l24.4 / TTF1* / Q62187* / Q15361* / transcription termination factor 1* / transcription termination factor, RNA polymerase I*ENSDARG0000009340344
si:ch73-37h15.2 / TTF1* / Q62187* / Q15361* / transcription termination factor 1* / transcription termination factor, RNA polymerase I*ENSDARG0000009410743
si:ch73-376l24.2 / TTF1* / Q62187* / Q15361* / transcription termination factor 1* / transcription termination factor, RNA polymerase I*ENSDARG0000009250838
si:ch73-376l24.3 / TTF1* / Q62187* / Q15361* / transcription termination factor 1* / transcription termination factor, RNA polymerase I*ENSDARG0000009404338
dmtf1 / Q6DG03 / cyclin D binding myb-like transcription factor 1 / Q9Y222* / Q8CE22* / 4932411N23Rik* / RIKEN cDNA 4932411N23 gene*ENSDARG0000002582417


Protein motifs (from Interpro)
Interpro ID Name
 IPR001005  SANT/Myb domain
 IPR009057  Homeobox-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
Surfactant metabolism
RNA Polymerase I Transcription Initiation
RNA Polymerase I Transcription Termination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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