ENSDARG00000094107


Danio rerio
si:ch73-37h15.2rnapolymerasedomaindnabindingiifactormybactivitysequence-specificsanthomeobox-likesuperfamilymyb-likeregulationcelldifferentiationnucleusrecruitingregulatoryregionsurfactantmetabolisminitiationtermination

Features
Gene ID: ENSDARG00000094107
  
Biological name :si:ch73-37h15.2
  
Synonyms : si:ch73-37h15.2
  
Possible biological names infered from orthology : Q15361 / Q62187 / transcription termination factor 1 / transcription termination factor, RNA polymerase I / TTF1
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 63288599
Gene end: 63294943
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000115377
NCBI entrez gene - 449954     See in Manteia.
swissprot - F1Q786
ZFIN ID - ZDB-GENE-041008-214
Ensembl - ENSDARG00000094107
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000027242Gallus gallus
 TTF1ENSG00000125482Homo sapiens
 Ttf1ENSMUSG00000026803Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:ch73-376l24.2 / TTF1* / Q62187* / Q15361* / transcription termination factor 1* / transcription termination factor, RNA polymerase I*ENSDARG0000009250862
si:ch73-376l24.3 / TTF1* / Q62187* / Q15361* / transcription termination factor 1* / transcription termination factor, RNA polymerase I*ENSDARG0000009404362
si:ch73-376l24.4 / TTF1* / Q62187* / Q15361* / transcription termination factor 1* / transcription termination factor, RNA polymerase I*ENSDARG0000009340360
ttf1 / transcription termination factor, RNA polymerase I / Q15361* / Q62187* / transcription termination factor 1*ENSDARG0000009196747
si:ch73-376l24.6 / TTF1* / Q62187* / Q15361* / transcription termination factor 1* / transcription termination factor, RNA polymerase I*ENSDARG0000009399945
dmtf1 / Q6DG03 / cyclin D binding myb-like transcription factor 1 / Q9Y222* / Q8CE22* / 4932411N23Rik* / RIKEN cDNA 4932411N23 gene*ENSDARG0000002582416


Protein motifs (from Interpro)
Interpro ID Name
 IPR001005  SANT/Myb domain
 IPR009057  Homeobox-like domain superfamily
 IPR017877  Myb-like domain
 IPR017930  Myb domain


Gene Ontology (GO)
nitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular developmental processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular developmental processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular developmental processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular developmental processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular developmental processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular developmental processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular developmental processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular developmental processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular developmental processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular developmental processnitrogen compound metabnitrogen compound metabolic processbiosynthetic processbiosynthetic processcellular metabolic proccellular metabolic processprimary metabolic proceprimary metabolic processorganic substance metaborganic substance metabolic processcellular developmental cellular developmental process
DNA-binding transcription factor activitytranscription factor activity, protein bindingorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activitytranscription factor activity, protein bindingorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activitytranscription factor activity, protein bindingorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activitytranscription factor activity, protein bindingorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activitytranscription factor activity, protein bindingorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activitytranscription factor activity, protein bindingorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activitytranscription factor activity, protein bindingorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activitytranscription factor activity, protein bindingorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activitytranscription factor activity, protein bindingorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activitytranscription factor activity, protein bindingorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor acDNA-binding transcription factor activitytranscription factor activity, prottranscription factor activity, protein bindingorganic cyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingheterocyclic compound binding
cellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellcellorganelleorganelle
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0030154 cell differentiation IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IBA
 molecular_functionGO:0001135 transcription factor activity, RNA polymerase II transcription factor recruiting IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IBA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA


Pathways (from Reactome)
Pathway description
Surfactant metabolism
RNA Polymerase I Transcription Initiation
RNA Polymerase I Transcription Termination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr