ENSDARG00000099080


Danio rerio

Features
Gene ID: ENSDARG00000099080
  
Biological name :sbno1
  
Synonyms : sbno1 / strawberry notch homolog 1 (Drosophila)
  
Possible biological names infered from orthology : A3KN83 / strawberry notch 1 / strawberry notch homolog 1
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 44309997
Gene end: 44355534
  
Corresponding Affymetrix probe sets: Dr.24162.1.A1_at (Zebrafish Array)   Dr.24162.1.A1_s_at (Zebrafish Array)   Dr.25585.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000141425
swissprot - A0A0G2L9F7
ZFIN ID - ZDB-GENE-080522-2
Ensembl - ENSDARG00000099080
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SBNO1ENSGALG00000003392Gallus gallus
 SBNO1ENSG00000139697Homo sapiens
 Sbno1ENSMUSG00000038095Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:ch73-63e15.2 / SBNO2* / Q9Y2G9* / Q7TNB8* / strawberry notch homolog 2* / Protein strawberry notch homolog 2 *ENSDARG0000001618843
sbno2a / strawberry notch homolog 2a / SBNO2* / Q9Y2G9* / strawberry notch homolog 2*ENSDARG0000009880143


Protein motifs (from Interpro)
Interpro ID Name
 IPR026741  Protein strawberry notch
 IPR026937  Strawberry notch, helicase C domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0021999 neural plate anterior/posterior regionalization IMP
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain morphology , abnormal
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 ZFA:0000051 otic vesicle otic vesicle has fewer parts of type otolith , abnormal
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 ZFA:0000084 yolk yolk increased size , abnormal
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 ZFA:0000107 eye eye ventral side decreased pigmentation , abnormal
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 ZFA:0000128 midbrain midbrain decreased width , abnormal
midbrain morphology , abnormal
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 ZFA:0000282 sensory system sensory system epithelium decreased thickness , abnormal
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 ZFA:0001261 ventricular system ventricular system distended , abnormal
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 ZFA:0001617 otolith otolith broken , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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