ENSDARG00000098801


Danio rerio

Features
Gene ID: ENSDARG00000098801
  
Biological name :sbno2a
  
Synonyms : sbno2a / strawberry notch homolog 2a
  
Possible biological names infered from orthology : Protein strawberry notch homolog 2 / Q7TNB8 / Q9Y2G9 / SBNO2 / strawberry notch homolog 2
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 56811549
Gene end: 56884888
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000131480
NCBI entrez gene - 100330841     See in Manteia.
RefSeq - NM_001245962
RefSeq Peptide - NP_001232891
swissprot - A0A0G2KGP5
ZFIN ID - ZDB-GENE-100629-3
Ensembl - ENSDARG00000098801
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SBNO2ENSGALG00000037522Gallus gallus
 SBNO2ENSG00000064932Homo sapiens
 Sbno2ENSMUSG00000035673Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:ch73-63e15.2 / SBNO2* / Q9Y2G9* / Q7TNB8* / strawberry notch homolog 2* / Protein strawberry notch homolog 2 *ENSDARG0000001618862
sbno1 / strawberry notch homolog 1 (Drosophila) / A3KN83* / strawberry notch 1* / strawberry notch homolog 1*ENSDARG0000009908044


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR026741  Protein strawberry notch
 IPR026937  Strawberry notch, helicase C domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR030410  Protein strawberry notch homologue 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0048854 brain morphogenesis IMP
 biological_processGO:0050727 regulation of inflammatory response IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain morphology , abnormal
brain anterior-posterior axis decreased size , abnormal
brain dorsal-ventral axis decreased size , abnormal
Show

 ZFA:0000051 otic vesicle otic vesicle lacks all parts of type otolith , abnormal
otic vesicle has fewer parts of type otolith , abnormal
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 ZFA:0000077 tail bud tail bud decreased length , abnormal
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 ZFA:0000084 yolk yolk increased size , abnormal
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 ZFA:0000107 eye eye morphology , abnormal
eye ventral side decreased pigmentation , abnormal
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 ZFA:0000128 midbrain midbrain morphology , abnormal
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 ZFA:0000282 sensory system sensory system epithelium increased thickness , abnormal
sensory system epithelium decreased thickness , abnormal
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 ZFA:0001094 whole organism whole organism rough , abnormal
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 ZFA:0001117 post-vent region post-vent region curved ventral , abnormal
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 ZFA:0001261 ventricular system ventricular system deformed , abnormal
ventricular system decreased width , abnormal
ventricular system distended , abnormal
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 ZFA:0001617 otolith otolith broken , abnormal
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 ZFA:0009264 corneal epithelial cell corneal epithelial cell dislocated lens , abnormal
Show

 ZFA:0009306 neuroepithelial cell neuroepithelial cell dislocated ventricular system dorsal side, abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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