ENSDARG00000100028


Danio rerio
dnapole2synthesisreplicationrepairpolymerasecomplexinitiationgap-fillingligationgg-nerdualincisiontc-neralphaepsilonsubunitbbiosyntheticprocessbindingdna-directedactivityrecognitiondamagepcna-containingtelomerec-strandpcna-dependentlongpatch

Features
Gene ID: ENSDARG00000100028
  
Biological name :pole2
  
Synonyms : pole2 / polymerase (DNA directed), epsilon 2
  
Possible biological names infered from orthology : AC099934.2 / DNA polymerase epsilon 2, accessory subunit / O54956 / P56282 / polymerase (DNA directed), epsilon 2 (p59 subunit)
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 83010
Gene end: 86847
  
Corresponding Affymetrix probe sets: Dr.2435.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000135599
swissprot - A0A0G2KT55
ZFIN ID - ZDB-GENE-020419-16
Ensembl - ENSDARG00000100028
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 POLE2ENSGALG00000012237Gallus gallus
 POLE2ENSG00000100479Homo sapiens
 AC099934.2ENSMUSG00000113786Mus musculus
 Pole2ENSMUSG00000020974Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007185  DNA polymerase alpha/epsilon, subunit B


Gene Ontology (GO)
nitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic nitrogen compound metabolic processbiosynthetic processbiosynthetic processcellular metabolic processcellular metabolic processprimary metabolic processprimary metabolic processorganic substance metabolic organic substance metabolic process
organic cyclic compound bindingheterocyclic compound bindingcatalytic activity, acting on DNAtransferase activityorganic cyclic compound bindingheterocyclic compound bindingcatalytic activity, acting on DNAtransferase activityorganic cyclic compound bindingheterocyclic compound bindingcatalytic activity, acting on DNAtransferase activityorganic cyclic compound bindingheterocyclic compound bindingcatalytic activity, acting on DNAtransferase activityorganic cyclic compound bindingheterocyclic compound bindingcatalytic activity, acting on DNAtransferase activityorganic cyclic compound bindingheterocyclic compound bindingcatalytic activity, acting on DNAtransferase activityorganic cyclic compound bindingheterocyclic compound bindingcatalytic activity, acting on DNAtransferase activityorganic cyclic compound bindingheterocyclic compound bindingcatalytic activity, acting on DNAtransferase activityorganic cyclic compound bindingheterocyclic compound bindingcatalytic activity, acting on DNAtransferase activityorganic cyclic compound bindingheterocyclic compound bindingcatalytic activity, acting on DNAtransferase activityorganic cyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingheterocyclic compound bindingcatalytic activity, acting on DNAcatalytic activity, acting on DNAtransferase activitytransferase activity
TypeGO IDTermEv.Code
 biological_processGO:0006260 DNA replication IEA
 biological_processGO:0071897 DNA biosynthetic process IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003887 DNA-directed DNA polymerase activity IEA


Pathways (from Reactome)
Pathway description
Recognition of DNA damage by PCNA-containing replication complex
Telomere C-strand synthesis initiation
PCNA-Dependent Long Patch Base Excision Repair
Termination of translesion DNA synthesis
HDR through Homologous Recombination (HRR)
Gap-filling DNA repair synthesis and ligation in GG-NER
Dual Incision in GG-NER
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
DNA replication initiation
Activation of the pre-replicative complex


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain necrotic , abnormal
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 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000084 yolk yolk circular , abnormal
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 ZFA:0000106 extension extension decreased thickness , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000110 fourth ventricle fourth ventricle distended , abnormal
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 ZFA:0001094 whole organism whole organism viability , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001115 trunk trunk necrotic , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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