ENSDARG00000101009


Danio rerio

Features
Gene ID: ENSDARG00000101009
  
Biological name :cited4b
  
Synonyms : Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4b / cited4b
  
Possible biological names infered from orthology : Cbp/p300-interacting transactivator 4 / Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 / CITED4 / Q96RK1 / Q9WUL8
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 35535171
Gene end: 35537491
  
Corresponding Affymetrix probe sets: Dr.6570.1.S1_at (Zebrafish Array)   Dr.6570.1.S2_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000130899
Ensembl peptide - ENSDARP00000148949
Ensembl peptide - ENSDARP00000137672
NCBI entrez gene - 100006037     See in Manteia.
RefSeq - NM_200078
RefSeq Peptide - NP_956372
swissprot - A8E5L7
swissprot - A0A0R4ID40
ZFIN ID - ZDB-GENE-030425-5
Ensembl - ENSDARG00000101009
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CITED4ENSGALG00000000678Gallus gallus
 CITED4ENSG00000179862Homo sapiens
 Cited4ENSMUSG00000070803Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cited4a / Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4a / Q9WUL8* / CITED4* / Q96RK1* / Cbp/p300-interacting transactivator 4 * / Cbp/p300 interacting t...ENSDARG0000003599047
cited2 / Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 / O35740* / Q99967* / Cbp/p300-interacting transactivator 2 *ENSDARG0000003090533
cited1 / Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 / P97769* / Q99966* / Cbp/p300-interacting transactivator 1 *ENSDARG0000007776919


Protein motifs (from Interpro)
Interpro ID Name
 IPR007576  CITED


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0042692 muscle cell differentiation IMP
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IBA


Pathways (from Reactome)
Pathway description
Activation of the TFAP2 (AP-2) family of transcription factors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000114 heart heart dilated , abnormal
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 ZFA:0000155 somite somite slow muscle cell decreased amount , abnormal
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 ZFA:0001115 trunk trunk decreased length , abnormal
trunk decreased thickness , abnormal
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 ZFA:0009114 muscle cell muscle cell cell death increased occurrence , abnormal
muscle cell apoptotic process increased occurrence , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000059279 tfap2a / transcription factor AP-2 alpha / P05549*  / complex / reaction
 ENSDARG00000040606 tfap2c / transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) / Q61312* / Q92754* / transcription factor AP-2 gamma*  / complex / reaction
 ENSDARG00000104609 crebbpa / CREB binding protein a / CREBBP* / Q92793* / CREB binding protein*  / complex / reaction
 ENSDARG00000112452 crebbpb / CREB binding protein b / CREBBP* / Q92793* / CREB binding protein*  / complex / reaction






 

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