ENSDARG00000101675


Danio rerio

Features
Gene ID: ENSDARG00000101675
  
Biological name :zgc:123107
  
Synonyms : zgc:123107
  
Possible biological names infered from orthology : H2-Aa / H-2 class II histocompatibility antigen, A-B alpha chain / H2-Oa / HLA-DOA / HLA-DPA1 / HLA-DQA1 / HLA-DQA2 / HLA-DRA / major histocompatibility complex, class II, DO alpha / major histocompatibility complex, class II, DP alpha 1 / major histocompatibility complex, class II, DQ alpha 1 / major histocompatibility complex, class II, DQ alpha 2 / major histocompatibility complex, class II, DR alpha / P01903 / P01906 / P01909 / P06340 / P14434 / P20036
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 76377227
Gene end: 76383262
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000140770
Ensembl peptide - ENSDARP00000143199
Ensembl peptide - ENSDARP00000143187
Ensembl peptide - ENSDARP00000131722
NCBI entrez gene - 641415     See in Manteia.
RefSeq - NM_001037404
RefSeq Peptide - NP_001032481
swissprot - A0A0R4IWN3
swissprot - A0A0R4IDX2
ZFIN ID - ZDB-GENE-051113-192
Ensembl - ENSDARG00000101675
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 P01903ENSG00000204287Homo sapiens
 P01906ENSG00000237541Homo sapiens
 P01909ENSG00000196735Homo sapiens
 P06340ENSG00000204252Homo sapiens
 P20036ENSG00000231389Homo sapiens
 H2-AaENSMUSG00000036594Mus musculus
 H2-OaENSMUSG00000024334Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:busm1-194e12.8 / P20036* / P06340* / P01903* / P01909* / P01906* / HLA-DRA* / HLA-DOA* / HLA-DPA1* / HLA-DQA1* / HLA-DQA2* / major histocompatibility complex, class II, DR alpha* / major...ENSDARG0000010370247
si:busm1-194e12.11 / H2-Aa* / H2-Oa* / P20036* / P06340* / P14434* / P01903* / P01906* / P01909* / HLA-DRA* / HLA-DOA* / HLA-DPA1* / HLA-DQA1* / HLA-DQA2* / major histocompatibility complex...ENSDARG0000010371645
si:busm1-266f07.2 / H2-Aa* / H2-Oa* / P20036* / P06340* / P14434* / P01903* / P01906* / P01909* / HLA-DRA* / HLA-DOA* / HLA-DPA1* / HLA-DQA1* / HLA-DQA2* / major histocompatibility complex,...ENSDARG0000003174544
si:zfos-367g9.1 / H2-Aa* / H2-Oa* / P20036* / P06340* / P14434* / P01903* / P01906* / P01909* / HLA-DRA* / HLA-DOA* / HLA-DPA1* / HLA-DQA1* / HLA-DQA2* / major histocompatibility complex, c...ENSDARG0000007481644
CT583723.2 / P20036* / P01903* / P01906* / P01909* / P06340* / HLA-DRA* / HLA-DOA* / HLA-DQA1* / HLA-DQA2* / HLA-DPA1* / major histocompatibility complex, class II, DR alpha* / major histoc...ENSDARG0000011656543
si:zfos-2070c2.1 / si:busm1-160c18.6 / H2-Aa* / H2-Oa* / P06340* / P20036* / P01903* / P01906* / P01909* / P14434* / HLA-DRA* / HLA-DOA* / HLA-DQA2* / HLA-DPA1* / HLA-DQA1* / major histocom...ENSDARG0000007020642
si:ch73-211l2.3 / H2-Aa* / H2-Oa* / P20036* / P06340* / P14434* / P01903* / P01906* / P01909* / HLA-DRA* / HLA-DOA* / HLA-DPA1* / HLA-DQA1* / HLA-DQA2* / major histocompatibility complex, c...ENSDARG0000007593242
CU914776.2 / P20036* / P01903* / P01906* / P01909* / P06340* / HLA-DRA* / HLA-DOA* / HLA-DQA1* / HLA-DQA2* / HLA-DPA1* / major histocompatibility complex, class II, DR alpha* / major histoc...ENSDARG0000011460133


Protein motifs (from Interpro)
Interpro ID Name
 IPR001003  MHC class II, alpha chain, N-terminal
 IPR003006  Immunoglobulin/major histocompatibility complex, conserved site
 IPR003597  Immunoglobulin C1-set
 IPR007110  Immunoglobulin-like domain
 IPR011162  MHC classes I/II-like antigen recognition protein
 IPR013783  Immunoglobulin-like fold
 IPR014745  MHC class II, alpha/beta chain, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006955 immune response IEA
 biological_processGO:0019882 antigen processing and presentation IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0042613 MHC class II protein complex IEA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
MHC class II antigen presentation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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