ENSDARG00000103422


Danio rerio

Features
Gene ID: ENSDARG00000103422
  
Biological name :usp10
  
Synonyms : ubiquitin specific peptidase 10 / usp10
  
Possible biological names infered from orthology : P52479 / Q14694
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 69142757
Gene end: 69185124
  
Corresponding Affymetrix probe sets: Dr.1827.1.A1_at (Zebrafish Array)   Dr.25860.1.S1_at (Zebrafish Array)   XM_680529_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000136913
Ensembl peptide - ENSDARP00000149827
Ensembl peptide - ENSDARP00000145430
Ensembl peptide - ENSDARP00000139500
Ensembl peptide - ENSDARP00000135611
NCBI entrez gene - 564632     See in Manteia.
RefSeq - XM_005169051
RefSeq - XM_005169052
RefSeq - XM_680529
swissprot - A0A0R4IVE2
swissprot - A0A0R4IQ47
swissprot - A0A0R4IK19
ZFIN ID - ZDB-GENE-030219-132
Ensembl - ENSDARG00000103422
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 USP10ENSGALG00000005674Gallus gallus
 USP10ENSG00000103194Homo sapiens
 Usp10ENSMUSG00000031826Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001394  Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 IPR009818  Ataxin-2, C-terminal
 IPR018200  Ubiquitin specific protease, conserved site
 IPR028889  Ubiquitin specific protease domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0016579 protein deubiquitination IEA
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Termination of translesion DNA synthesis
Ub-specific processing proteases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000155 somite somite fused with somite , abnormal
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 ZFA:0001058 caudal fin caudal fin deformed , abnormal
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 ZFA:0001094 whole organism whole organism decreased size , abnormal
whole organism curved ventral , abnormal
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 ZFA:0001115 trunk trunk decreased thickness , abnormal
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 ZFA:0001117 post-vent region post-vent region curled , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000008678 snx3 / sorting nexin 3 / O60493*  / complex
 ENSDARG00000035559 tp53 / P79734 / tumor protein p53 / Trp53* / P04637* / P02340* / transformation related protein 53*  / complex
 ENSDARG00000079198 usp13 / F1QFS9 / ubiquitin specific peptidase 13 / Q92995* / Q5BKP2* / ubiquitin specific peptidase 13 (isopeptidase T-3)*  / complex
 ENSDARG00000041107 cftr / Q1LX78 / cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7) / P13569* / P26361* / cystic fibrosis transmembrane conductance regulator*  / complex






 

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