ENSDARG00000104280


Danio rerio

Features
Gene ID: ENSDARG00000104280
  
Biological name :bnip1b
  
Synonyms : BCL2 interacting protein 1b / bnip1b
  
Possible biological names infered from orthology : BCL2 interacting protein 1 / BNIP1 / Q12981 / Q6QD59 / Vesicle transport protein SEC20
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 41535954
Gene end: 41545995
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000132436
NCBI entrez gene - 795732     See in Manteia.
swissprot - A0A0R4IG59
ZFIN ID - ZDB-GENE-120203-6
Ensembl - ENSDARG00000104280
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 BNIP1ENSGALG00000002882Gallus gallus
 BNIP1ENSG00000113734Homo sapiens
 Bnip1ENSMUSG00000024191Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
bnip1a / BCL2 interacting protein 1a / BNIP1* / Q6QD59* / Q12981* / BCL2 interacting protein 1* / Vesicle transport protein SEC20 *ENSDARG0000007825978


Protein motifs (from Interpro)
Interpro ID Name
 IPR005606  Sec20


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005783 endoplasmic reticulum IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0046982 protein heterodimerization activity IPI


Pathways (from Reactome)
Pathway description
COPI-dependent Golgi-to-ER retrograde traffic


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000152 retina retina apoptotic process increased occurrence , abnormal
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 ZFA:0009127 photoreceptor cell photoreceptor cell apoptotic , abnormal
Show

 ZFA:0009262 retinal cone cell retinal cone cell decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000020405 napab / N-ethylmaleimide-sensitive factor attachment protein, alpha b / NAPA* / Q9DB05* / P54920* / NSF attachment protein alpha* / Alpha-soluble NSF attachment protein *  / complex / reaction
 ENSDARG00000038991 nsfb / N-ethylmaleimide-sensitive factor b / NSF* / P46459* / P46460* / Vesicle-fusing ATPase * / N-ethylmaleimide sensitive factor, vesicle fusing ATPase*  / reaction / complex
 ENSDARG00000007654 nsfa / N-ethylmaleimide-sensitive factor a / NSF* / P46459* / P46460* / Vesicle-fusing ATPase * / N-ethylmaleimide sensitive factor, vesicle fusing ATPase*  / reaction / complex
 ENSDARG00000100435 Q7SXP0 / sec22bb / SEC22 homolog B, vesicle trafficking protein b / SEC22B* / O08547* / O75396* / Vesicle-trafficking protein SEC22b * / SEC22 homolog B, vesicle trafficking protein (gene/p...  / complex
 ENSDARG00000035763 stx18 / Q4VBI7 / syntaxin 18 / Q9P2W9*  / complex






 

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