ENSG00000133256


Homo sapiens

Features
Gene ID: ENSG00000133256
  
Biological name :PDE6B
  
Synonyms : P35913 / PDE6B / phosphodiesterase 6B
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: 1
Band: p16.3
Gene start: 625584
Gene end: 670782
  
Corresponding Affymetrix probe sets: 1557777_at (Human Genome U133 Plus 2.0 Array)   210304_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000418454
Ensembl peptide - ENSP00000418256
Ensembl peptide - ENSP00000420228
Ensembl peptide - ENSP00000420295
Ensembl peptide - ENSP00000255622
Ensembl peptide - ENSP00000406334
Ensembl peptide - ENSP00000417178
Ensembl peptide - ENSP00000417852
NCBI entrez gene - 5158     See in Manteia.
OMIM - 180072
RefSeq - XM_017008289
RefSeq - XM_011513477
RefSeq - XM_011513478
RefSeq - XM_017008283
RefSeq - XM_017008284
RefSeq - XM_017008285
RefSeq - XM_017008286
RefSeq - XM_017008287
RefSeq - XM_017008288
RefSeq - NM_000283
RefSeq - NM_001145291
RefSeq - NM_001145292
RefSeq - XM_011513473
RefSeq - XM_011513474
RefSeq - XM_011513475
RefSeq - XM_011513476
RefSeq Peptide - NP_001138764
RefSeq Peptide - NP_000274
RefSeq Peptide - NP_001138763
swissprot - C9J7V6
swissprot - C9J628
swissprot - P35913
swissprot - H7C4F7
swissprot - H7C4P9
Ensembl - ENSG00000133256
  
Related genetic diseases (OMIM): 163500 - Night blindness, congenital stationary, autosomal dominant 2, 163500
  613801 - Retinitis pigmentosa-40, 613801
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pde6bENSDARG00000011671Danio rerio
 PDE6BENSGALG00000015373Gallus gallus
 Pde6bENSMUSG00000029491Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PDE6A / P16499 / phosphodiesterase 6AENSG0000013291572
PDE6C / P51160 / phosphodiesterase 6CENSG0000009546464
PDE11A / Q9HCR9 / phosphodiesterase 11AENSG0000012865531
PDE5A / O76074 / phosphodiesterase 5AENSG0000013873530
PDE2A / O00408 / phosphodiesterase 2AENSG0000018664227
PDE11A / phosphodiesterase 11AENSG0000028474127
PDE10A / Q9Y233 / phosphodiesterase 10AENSG0000011254123
PDE3A / Q14432 / phosphodiesterase 3AENSG0000017257218
PDE3B / Q13370 / phosphodiesterase 3BENSG0000015227016
PDE9A / O76083 / phosphodiesterase 9AENSG0000016019116


Protein motifs (from Interpro)
Interpro ID Name
 IPR002073  3"5"-cyclic nucleotide phosphodiesterase, catalytic domain
 IPR003018  GAF domain
 IPR003607  HD/PDEase domain
 IPR023088  3"5"-cyclic nucleotide phosphodiesterase
 IPR023174  3"5"-cyclic nucleotide phosphodiesterase, conserved site
 IPR029016  GAF-like domain superfamily
 IPR036971  3"5"-cyclic nucleotide phosphodiesterase, catalytic domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007223 Wnt signaling pathway, calcium modulating pathway TAS
 biological_processGO:0007601 visual perception TAS
 biological_processGO:0007603 phototransduction, visible light TAS
 biological_processGO:0009583 detection of light stimulus IEA
 biological_processGO:0016056 rhodopsin mediated signaling pathway TAS
 biological_processGO:0022400 regulation of rhodopsin mediated signaling pathway TAS
 biological_processGO:0046037 GMP metabolic process IMP
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0051480 regulation of cytosolic calcium ion concentration IMP
 biological_processGO:0060041 retina development in camera-type eye IEA
 cellular_componentGO:0001750 photoreceptor outer segment IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0097381 photoreceptor disc membrane TAS
 molecular_functionGO:0004114 3",5"-cyclic-nucleotide phosphodiesterase activity IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008081 phosphoric diester hydrolase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0047555 3",5"-cyclic-GMP phosphodiesterase activity IMP


Pathways (from Reactome)
Pathway description
Activation of the phototransduction cascade
Inactivation, recovery and regulation of the phototransduction cascade
Ca2+ pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000035 Abnormality of the testis 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000602 Ophthalmoplegia 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000662 Night blindness 
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 HP:0000842 Hyperinsulinemia 
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 HP:0000987 Scarring 
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 HP:0001249 Mental retardation 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0007642 Congenital stationary night blindness 
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 HP:0007663 Decreased central vision 
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 HP:0007675 Progressive night blindness 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0007766 Hypoplastic optic disks 
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 HP:0008002 Macular pigmentary changes 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0008323 Abnormal rod and cone electroretinograms 
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 HP:0008736 Hypoplasia of penis 
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 HP:0011003 Severe Myopia 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000114349 GNAT1 / P11488 / G protein subunit alpha transducin 1  / complex / reaction
 ENSG00000185527 PDE6G / P18545 / phosphodiesterase 6G  / complex
 ENSG00000132915 PDE6A / P16499 / phosphodiesterase 6A  / complex
 ENSG00000134183 GNAT2 / P19087 / G protein subunit alpha transducin 2  / complex / reaction






 

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