ENSG00000134595


Homo sapiens

Features
Gene ID: ENSG00000134595
  
Biological name :SOX3
  
Synonyms : P41225 / SOX3 / SRY-box 3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: -1
Band: q27.1
Gene start: 140502985
Gene end: 140505116
  
Corresponding Affymetrix probe sets: 1553802_a_at (Human Genome U133 Plus 2.0 Array)   214633_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000359567
NCBI entrez gene - 6658     See in Manteia.
OMIM - 313430
RefSeq - NM_005634
RefSeq Peptide - NP_005625
swissprot - P41225
Ensembl - ENSG00000134595
  
Related genetic diseases (OMIM): 300123 - Mental retardation, X-linked, with isolated growth hormone deficiency, 300123
  312000 - Panhypopituitarism, X-linked, 312000

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sox3ENSDARG00000053569Danio rerio
 Sox3ENSMUSG00000045179Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SOX1 / O00570 / SRY-box 1ENSG0000018296849
SOX2 / P48431 / SRY-box 2ENSG0000018144943
SOX21 / Q9Y651 / SRY-box 21ENSG0000012528524
SOX15 / O60248 / SRY-box 15ENSG0000012919424
SOX14 / O95416 / SRY-box 14ENSG0000016887523
SOX10 / P56693 / SRY-box 10ENSG0000010014620
SOX17 / Q9H6I2 / SRY-box 17ENSG0000016473620
SOX4 / Q06945 / SRY-box 4ENSG0000012476619
SOX9 / P48436 / SRY-box 9ENSG0000012539819
SOX7 / Q9BT81 / SRY-box 7ENSG0000017105619
SOX11 / P35716 / SRY-box 11ENSG0000017688719
SOX18 / P35713 / SRY-box 18ENSG0000020388319
SOX8 / P57073 / SRY-box 8ENSG0000000551317
SRY / Q05066 / sex determining region YENSG0000018489517
AC105001.2ENSG0000025872415
SOX12 / O15370 / SRY-box 12ENSG0000017773214


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain
 IPR022097  Transcription factor SOX
 IPR036910  High mobility group box domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007417 central nervous system development TAS
 biological_processGO:0007423 sensory organ development ISS
 biological_processGO:0007530 sex determination IMP
 biological_processGO:0021854 hypothalamus development ISS
 biological_processGO:0021983 pituitary gland development ISS
 biological_processGO:0045665 negative regulation of neuron differentiation ISS
 biological_processGO:0060324 face development ISS
 biological_processGO:1903507 negative regulation of nucleic acid-templated transcription IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 molecular_functionGO:0000979 RNA polymerase II core promoter sequence-specific DNA binding ISS
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0003677 DNA binding TAS


Pathways (from Reactome)
Pathway description
Deactivation of the beta-catenin transactivating complex


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000026 Hypogonadism, male "Lack of function of the males gonads (i.e., testes)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000044 Hypogonadotrophic hypogonadism "Hypogonadotropic hypogonadism is characterized by reduced function of the gonads (testes in males or ovaries in females) and results from the absence of the gonadal stimulating pituitary hormones: follicle stimulating hormone (FSH) and luteinizing hormone (LH)." [HPO:curators]
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 HP:0000062 Ambiguous genitalia 
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 HP:0000141 Amenorrhea 
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 HP:0000147 polycystic ovaries 
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000457 Flat nose 
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 HP:0000458 Anosmia "An inability to perceive odors. This is a general term describing inability to smell arising in any part of the process of smelling from absorption of odorants into the nasal mucous overlying the olfactory epithelium, diffusion to the cilia, binding to olfactory receptor sites, generation of action potentials in olfactory neurons, and perception of a smell." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000717 Autism 
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 HP:0000789 Infertility 
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 HP:0000821 Hypothyroidism 
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 HP:0000823 Delayed puberty 
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 HP:0000824 Growth hormone deficiency "Insufficient production of growth hormone, which is produced by the anterior pituitary gland." [HPO:curators]
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 HP:0000839 Pituitary dwarfism "A type of reduced stature with normal proportions related to dysfunction of the pituitary gland related to either an isolated defect in the secretion of growth hormone or to panhypopituitarism, i.e., a deficit of all the anterior pituitary hormones." [HPO:curators]
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 HP:0000871 Panhypopituitarism "A pituitary functional deficit affecting all the anterior pituitary hormones (growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone, luteinizing hormone, adrenocorticotropic hormone, and prolactin)." [HPO:curators]
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 HP:0000873 Diabetes insipidus "A state of excessive water intake and hypotonic (dilute) polyuria. Diabetes insipidus may be due to failure of vasopressin (AVP) release (central or neurogenic diabetes insipidus) or to a failure of the kidney to respond to AVP (nephrogenic diabetes insipidus)." [HPO:curators]
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 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
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 HP:0000958 Dry skin 
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 HP:0000966 Hypohidrosis "Abnormally diminished capacity to sweat." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001417 X-linked inheritance "A mode of inheritance that is observed for traits related to a gene encoded on the X chromosome." [HPO:curators]
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0001943 Hypoglycemia "A lower than normal level of blood glucose." [HPO:curators]
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 HP:0001959 Polydipsia 
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 HP:0002019 Constipation 
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 HP:0002032 Esophageal atresia "A developmental defect resulting in complete obliteration of the lumen of the esophagus such that the esophagus ends in a blind pouch rather than connecting to the stomach." [HPO:curators]
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 HP:0002360 Sleep disturbances "An abnormality of sleep including such phenomena as 1) insomnia/hypersomnia, 2) non-restorative sleep, 3) sleep schedule disorder, 4) excessive daytime somnolence, 5) sleep apnea, and 6) restlessness." [HPO:curators]
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 HP:0002575 Tracheoesophageal fistula "An abnormal connection (fistula) between the esophagus and the trachea." [HPO:curators]
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 HP:0002615 Hypotension 
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0002920 Decreased serum ACTH 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004374 Hemiplegia/hemiparesis "Loss of strength in the arm, leg, and sometimes face on one side of the body. Hemiplegia refers to a severe or complete loss of strength, whereas hemiparesis refers to a relatively mild loss of strength." [HPO:curators]
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 HP:0005625 Osteoporosis of vertebrae "Osteoporosis affecting predominantly the vertebrae." [HPO:curators]
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 HP:0007360 Aplasia/Hypoplasia of the cerebellum 
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 HP:0008187 Absence of secondary sex characteristics 
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 HP:0008245 Tsh deficient hypothyroidism 
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 HP:0008734 Decreased testicular size 
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 HP:0008736 Hypoplasia of penis 
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 HP:0009800 maternal diabetes "Maternal diabetes can either be a gestational, mostly type 2 diabetes, or a type 1 diabetes. Essential is the resulting maternal hyperglycemia as a non-specific teratogen, imposing the same risk of congenital malformations to pregnant women with both type 1 and type2 diabetes." [HPO:curators]
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 HP:0009888 Abnormality of secondary sexual hair "Abnormality of the growth of secondary sexual hair, which normally ensues during puberty. In males, secondary sexual hair usually comprises body hair, including underarm, abdominal, chest, and pubic hair. In females, secondary sexual hair usually comprises a lesser degree of body hair, most prominently underarm and pubic hair." [HPO:curators]
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 HP:0010311 Aplasia/Hypoplasia of the breasts "Absence or underdevelopment of the breasts." [HPO:curators]
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 HP:0010627 Hypoplasia of the pituitary gland "Underdevelopment of the pituitary gland." [HPO:curators]
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 HP:0011755 Ectopic posterior pituitary "An abnormal anatomical location of the posterior lobe of the hypophysis, also known as the `neurohypophysis` (FMA:74628). The posterior pituitary is normally present in the dorsal portion of the sella turcica, but when ectopic is usually near the median eminence. This defect is likely to be due to abnormal migration during embryogenesis." [DDD:spark, HPO:probinson]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0012731 Ectopic anterior pituitary gland "Abnormal anatomic location of the anterior pituitary gland." [HPO:probinson]
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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 HP:0040086 Abnormal prolactin level 
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 HP:0100842 Septo-optic dysplasia "Underdevelopment of the optic nerve and absence of the septum pellucidum." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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