ENSG00000138100


Homo sapiens

Features
Gene ID: ENSG00000138100
  
Biological name :TRIM54
  
Synonyms : Q9BYV2 / TRIM54 / tripartite motif containing 54
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: p23.3
Gene start: 27282392
Gene end: 27307439
  
Corresponding Affymetrix probe sets: 233669_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000296098
Ensembl peptide - ENSP00000369415
NCBI entrez gene - 57159     See in Manteia.
OMIM - 606474
RefSeq - NM_032546
RefSeq - NM_187841
RefSeq Peptide - NP_115935
RefSeq Peptide - NP_912730
swissprot - Q9BYV2
Ensembl - ENSG00000138100
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trim54ENSDARG00000029907Danio rerio
 TRIM54ENSGALG00000033203Gallus gallus
 Q9ERP3ENSMUSG00000062077Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9BYV6 / TRIM55 / tripartite motif containing 55ENSG0000014757356
Q969Q1 / TRIM63 / tripartite motif containing 63ENSG0000015802251
Q9NQ86 / TRIM36 / tripartite motif containing 36ENSG0000015250327
Q7Z4K8 / TRIM46 / tripartite motif containing 46ENSG0000016346227
MID1 / O15344 / midline 1ENSG0000010187125
MID2 / Q9UJV3 / midline 2ENSG0000008056124
Q6ZTA4 / TRIM67 / tripartite motif containing 67ENSG0000011928323
TRIM9 / Q9C026 / tripartite motif containing 9ENSG0000010050522
FSD1 / Q9BTV5 / fibronectin type III and SPRY domain containing 1ENSG0000010525511
FSD1L / Q9BXM9 / fibronectin type III and SPRY domain containing 1 likeENSG0000010670111


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017903  COS domain
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif
 IPR033492  Tripartite motif-containing protein 54


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007017 microtubule-based process NAS
 biological_processGO:0007026 negative regulation of microtubule depolymerization IEA
 biological_processGO:0007165 signal transduction NAS
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0055001 muscle cell development IEA
 biological_processGO:0070507 regulation of microtubule cytoskeleton organization IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005874 microtubule NAS
 cellular_componentGO:0005875 microtubule associated complex IEA
 cellular_componentGO:0030018 Z disc IEA
 molecular_functionGO:0004871 obsolete signal transducer activity NAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008017 microtubule binding IEA
 molecular_functionGO:0008270 zinc ion binding NAS
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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