ENSGALG00000033203


Gallus gallus

Features
Gene ID: ENSGALG00000033203
  
Biological name :TRIM54
  
Synonyms : TRIM54 / tripartite motif containing 54
  
Possible biological names infered from orthology : Q9BYV2 / Q9ERP3 / Tripartite motif-containing protein 54
  
Species: Gallus gallus
  
Chr. number: 3
Strand: -1
Band:
Gene start: 104988818
Gene end: 104992131
  
Corresponding Affymetrix probe sets: Gga.9764.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000056907
Ensembl peptide - ENSGALP00000063131
NCBI entrez gene - 107053153     See in Manteia.
RefSeq - XM_015285001
RefSeq - XM_015285000
swissprot - A0A1L1RWB8
swissprot - A0A1D5PVE1
Ensembl - ENSGALG00000033203
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trim54ENSDARG00000029907Danio rerio
 Q9BYV2ENSG00000138100Homo sapiens
 Q9ERP3ENSMUSG00000062077Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TRIM55 / tripartite motif-containing protein 55 / Q9BYV6* / tripartite motif containing 55*ENSGALG0000004132758
TRIM63 / tripartite motif containing 63 / Q969Q1*ENSGALG0000003410754
TRIM36 / tripartite motif containing 36 / Q80WG7* / Q9NQ86* / E3 ubiquitin-protein ligase Trim36 *ENSGALG0000000818829
MID2 / midline 2 / Q9UJV3* / Mus musculus midline 2 (Mid2), transcript variant 2, mRNA.*ENSGALG0000000386025
MID1 / E3 ubiquitin-protein ligase Midline-1 / O15344* / O70583* / midline 1*ENSGALG0000003850425
TRIM9 / tripartite motif containing 9 / Q8C7M3* / Q9C026* / E3 ubiquitin-protein ligase TRIM9 *ENSGALG0000001236723
TRIM67 / tripartite motif containing 67 / Q505D9* / Q6ZTA4* / Tripartite motif-containing protein 67 *ENSGALG0000003096012
FSD1L / fibronectin type III and SPRY domain containing 1 like / Q8BYN5* / Q9BXM9* / Mus musculus fibronectin type III and SPRY domain containing 1-like (Fsd1l), transcript variant 3, mRNA.*ENSGALG0000001544211
FSD1* / Q7TPM6* / Q9BTV5* / fibronectin type III and SPRY domain containing 1* / Fibronectin type III and SPRY domain-containing protein 1 *ENSGALG000000329381


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017903  COS domain
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif
 IPR033492  Tripartite motif-containing protein 54


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007026 negative regulation of microtubule depolymerization IEA
 biological_processGO:0055001 muscle cell development IEA
 biological_processGO:0070507 regulation of microtubule cytoskeleton organization IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005874 microtubule IEA
 cellular_componentGO:0005875 microtubule associated complex IEA
 molecular_functionGO:0008017 microtubule binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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