ENSGALG00000012367


Gallus gallus
zincdomainTRIM9fingerproteinbindingring-typespryubiquitinationactivityionb-box-typebb-boxc-terminalfibronectintypeiiiringfyvephd-typeconcanavalina-likelectinglucanasesuperfamilyimmunoglobulin-likefoldcosconservedsite

Features
Gene ID: ENSGALG00000012367
  
Biological name :TRIM9
  
Synonyms : TRIM9 / tripartite motif containing 9
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase TRIM9 / Q8C7M3 / Q9C026
  
Species: Gallus gallus
  
Chr. number: 5
Strand: -1
Band:
Gene start: 58110007
Gene end: 58139997
  
Corresponding Affymetrix probe sets: GgaAffx.7826.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000058269
Ensembl peptide - ENSGALP00000020171
NCBI entrez gene - 423579     See in Manteia.
RefSeq - XM_015276764
RefSeq - XM_015276762
RefSeq - XM_015276763
RefSeq - XM_015276751
RefSeq - XM_015276752
RefSeq - XM_015276753
RefSeq - XM_015276754
RefSeq - XM_015276755
RefSeq - XM_015276756
RefSeq - XM_015276757
RefSeq - XM_015276758
RefSeq - XM_015276759
RefSeq - XM_015276760
swissprot - F1NA54
swissprot - A0A1D5PZ60
Ensembl - ENSGALG00000012367
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trim9ENSDARG00000039123Danio rerio
 TRIM9ENSG00000100505Homo sapiens
 Trim9ENSMUSG00000021071Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TRIM67 / tripartite motif containing 67 / Q505D9* / Q6ZTA4* / Tripartite motif-containing protein 67 *ENSGALG0000003096050
MID2 / midline 2 / Q9UJV3* / Mus musculus midline 2 (Mid2), transcript variant 2, mRNA.*ENSGALG0000000386025
MID1 / E3 ubiquitin-protein ligase Midline-1 / O15344* / O70583* / midline 1*ENSGALG0000003850425
TRIM36 / tripartite motif containing 36 / Q80WG7* / Q9NQ86* / E3 ubiquitin-protein ligase Trim36 *ENSGALG0000000818823
FSD1L / fibronectin type III and SPRY domain containing 1 like / Q8BYN5* / Q9BXM9* / Mus musculus fibronectin type III and SPRY domain containing 1-like (Fsd1l), transcript variant 3, mRNA.*ENSGALG0000001544215
TRIM63 / tripartite motif containing 63 / Q969Q1*ENSGALG0000003410713
TRIM55 / tripartite motif-containing protein 55 / Q9BYV6* / tripartite motif containing 55*ENSGALG0000004132713
TRIM54 / tripartite motif containing 54 / Q9BYV2* / Q9ERP3* / Tripartite motif-containing protein 54 *ENSGALG0000003320312
FSD1* / Q7TPM6* / Q9BTV5* / fibronectin type III and SPRY domain containing 1* / Fibronectin type III and SPRY domain-containing protein 1 *ENSGALG000000329384


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR001870  B30.2/SPRY domain
 IPR003649  B-box, C-terminal
 IPR003877  SPRY domain
 IPR003961  Fibronectin type III
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR013783  Immunoglobulin-like fold
 IPR017903  COS domain
 IPR017907  Zinc finger, RING-type, conserved site


Gene Ontology (GO)
nitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationcellular component biogenesisestablishment of localizationcatabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationcellular component biogenesisestablishment of localizationcatabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationcellular component biogenesisestablishment of localizationcatabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationcellular component biogenesisestablishment of localizationcatabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationcellular component biogenesisestablishment of localizationcatabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationcellular component biogenesisestablishment of localizationcatabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationcellular component biogenesisestablishment of localizationcatabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationcellular component biogenesisestablishment of localizationcatabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationcellular component biogenesisestablishment of localizationcatabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular component organizationcellular component biogenesisestablishment of localizationcatabolic processnitrogen compoundnitrogen compound metabolic processcellular metabolicellular metabolic processprimary metabolicprimary metabolic processorganic substanceorganic substance metabolic processcellular componencellular component organizationcellular componencellular component biogenesisestablishment of establishment of localizationcatabolic processcatabolic process
catalytic activity, acting on a proteintransferase activityion bindingprotein bindingcatalytic activity, acting on a proteintransferase activityion bindingprotein bindingcatalytic activity, acting on a proteintransferase activityion bindingprotein bindingcatalytic activity, acting on a proteintransferase activityion bindingprotein bindingcatalytic activity, acting on a proteintransferase activityion bindingprotein bindingcatalytic activity, acting on a proteintransferase activityion bindingprotein bindingcatalytic activity, acting on a proteintransferase activityion bindingprotein bindingcatalytic activity, acting on a proteintransferase activityion bindingprotein bindingcatalytic activity, acting on a proteintransferase activityion bindingprotein bindingcatalytic activity, acting on a proteintransferase activityion bindingprotein bindingcatalytic activity, acting on a procatalytic activity, acting on a proteintransferase activitytransferase activityion bindingion bindingprotein bindingprotein binding
cellcellcellcellcellcellcellcellcellcellcellcell
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0035544 negative regulation of SNARE complex assembly IEA
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0030425 dendrite IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0019904 protein domain specific binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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