ENSG00000162599


Homo sapiens

Features
Gene ID: ENSG00000162599
  
Biological name :NFIA
  
Synonyms : NFIA / nuclear factor I A / Q12857
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: p31.3
Gene start: 60865259
Gene end: 61462793
  
Corresponding Affymetrix probe sets: 1557639_at (Human Genome U133 Plus 2.0 Array)   1558101_at (Human Genome U133 Plus 2.0 Array)   224970_at (Human Genome U133 Plus 2.0 Array)   224975_at (Human Genome U133 Plus 2.0 Array)   224976_at (Human Genome U133 Plus 2.0 Array)   226806_s_at (Human Genome U133 Plus 2.0 Array)   229994_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000473830
Ensembl peptide - ENSP00000419785
Ensembl peptide - ENSP00000474461
Ensembl peptide - ENSP00000474817
Ensembl peptide - ENSP00000474806
Ensembl peptide - ENSP00000474462
Ensembl peptide - ENSP00000360226
Ensembl peptide - ENSP00000360227
Ensembl peptide - ENSP00000360229
Ensembl peptide - ENSP00000360231
Ensembl peptide - ENSP00000360233
Ensembl peptide - ENSP00000384523
Ensembl peptide - ENSP00000384680
NCBI entrez gene - 4774     See in Manteia.
OMIM - 600727
RefSeq - XM_017001363
RefSeq - NM_001134673
RefSeq - NM_001145511
RefSeq - NM_001145512
RefSeq - NM_005595
RefSeq - XM_011541512
RefSeq - XM_011541514
RefSeq - XM_011541515
RefSeq - XM_017001362
RefSeq Peptide - NP_001138983
RefSeq Peptide - NP_001138984
RefSeq Peptide - NP_005586
RefSeq Peptide - NP_001128145
swissprot - S4R308
swissprot - S4R3K4
swissprot - B1AKN8
swissprot - B1AKN7
swissprot - B1AKN6
swissprot - S4R3K5
swissprot - S4R3W2
swissprot - S4R3W6
swissprot - B1AKN5
swissprot - Q12857
Ensembl - ENSG00000162599
  
Related genetic diseases (OMIM): 613735 - Brain malformations with or without urinary tract defects, 613735

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NFIAENSGALG00000010924Gallus gallus
 NfiaENSMUSG00000028565Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NFIX / Q14938 / nuclear factor I XENSG0000000844157
NFIB / O00712 / nuclear factor I BENSG0000014786255
NFIC / P08651 / nuclear factor I CENSG0000014190551


Protein motifs (from Interpro)
Interpro ID Name
 IPR000647  CTF transcription factor/nuclear factor 1
 IPR003619  MAD homology 1, Dwarfin-type
 IPR019548  CTF transcription factor/nuclear factor 1, N-terminal
 IPR019739  CTF transcription factor/nuclear factor 1, conserved site
 IPR020604  CTF transcription factor/nuclear factor 1, DNA-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IBA
 biological_processGO:0006260 DNA replication IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0019079 viral genome replication NAS
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0060074 synapse maturation IEA
 biological_processGO:0072189 ureter development IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0030054 cell junction IDA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0008134 transcription factor binding IPI


Pathways (from Reactome)
Pathway description
RNA Polymerase III Transcription Termination
RNA Polymerase III Abortive And Retractive Initiation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000023 Inguinal hernia 
Show

 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
Show

 HP:0000089 Renal hypoplasia 
Show

 HP:0000126 Hydronephrosis 
Show

 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
Show

 HP:0000219 Thin upper lip 
Show

 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
Show

 HP:0000283 Broad face 
Show

 HP:0000331 Small chin 
Show

 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
Show

 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
Show

 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
Show

 HP:0000965 Cutis marmorata 
Show

 HP:0001249 Mental retardation 
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
Show

 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
Show

 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
Show

 HP:0002119 Ventriculomegaly 
Show

 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
Show

 HP:0003396 Syringomyelia 
Show

 HP:0003745 Sporadic 
Show

 HP:0003812 Phenotypic variability 
Show

 HP:0007099 Arnold-Chiari type I malformation "Arnold-Chiari type I malformation refers to a relatively mild degree of herniation of the posteroinferior region of the cerebellum (the cerebellar tonsils) into the cervical canal with little or no displacement of the fourth ventricle." [HPO:curators]
Show

 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr