ENSG00000164761


Homo sapiens

Features
Gene ID: ENSG00000164761
  
Biological name :TNFRSF11B
  
Synonyms : O00300 / TNF receptor superfamily member 11b / TNFRSF11B
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: -1
Band: q24.12
Gene start: 118923557
Gene end: 118952200
  
Corresponding Affymetrix probe sets: 204932_at (Human Genome U133 Plus 2.0 Array)   204933_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000297350
Ensembl peptide - ENSP00000427924
NCBI entrez gene - 4982     See in Manteia.
OMIM - 602643
RefSeq - NM_002546
RefSeq Peptide - NP_002537
swissprot - E5RFV7
swissprot - O00300
Ensembl - ENSG00000164761
  
Related genetic diseases (OMIM): 239000 - Paget disease of bone 5, juvenile-onset, 239000
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tnfrsf11bENSDARG00000098377Danio rerio
 TNFRSF11BENSGALG00000043167Gallus gallus
 O08712ENSMUSG00000063727Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O75509 / TNFRSF21 / TNF receptor superfamily member 21ENSG0000014607226
O95407 / TNFRSF6B / TNF receptor superfamily member 6bENSG0000024350924
P20333 / TNFRSF1B / TNF receptor superfamily member 1BENSG0000002813723
Q9Y6Q6 / TNFRSF11A / TNF receptor superfamily member 11aENSG0000014165518
CD40 / P25942 / CD40 moleculeENSG0000010101716
LTBR / P36941 / lymphotoxin beta receptorENSG0000011132116
Q92956 / TNFRSF14 / TNF receptor superfamily member 14ENSG0000015787314


Protein motifs (from Interpro)
Interpro ID Name
 IPR000488  Death domain
 IPR001368  TNFR/NGFR cysteine-rich region
 IPR011029  Death-like domain superfamily
 IPR011641  Tyrosine-protein kinase ephrin type A/B receptor-like
 IPR017371  Tumour necrosis factor receptor 11B
 IPR022323  Tumour necrosis factor receptor 11


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development TAS
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0006954 inflammatory response IBA
 biological_processGO:0006955 immune response IBA
 biological_processGO:0007165 signal transduction TAS
 biological_processGO:0007584 response to nutrient IEA
 biological_processGO:0010035 response to inorganic substance IEA
 biological_processGO:0010469 regulation of signaling receptor activity IEA
 biological_processGO:0030198 extracellular matrix organization IEA
 biological_processGO:0032026 response to magnesium ion IEA
 biological_processGO:0032496 response to lipopolysaccharide IBA
 biological_processGO:0033209 tumor necrosis factor-mediated signaling pathway TAS
 biological_processGO:0042127 regulation of cell proliferation IBA
 biological_processGO:0042489 negative regulation of odontogenesis of dentin-containing tooth IEA
 biological_processGO:0042493 response to drug IEA
 biological_processGO:0042981 regulation of apoptotic process IBA
 biological_processGO:0043627 response to estrogen IEA
 biological_processGO:0045779 negative regulation of bone resorption IEA
 biological_processGO:0046685 response to arsenic-containing substance IEA
 biological_processGO:0097190 apoptotic signaling pathway IBA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 molecular_functionGO:0005031 tumor necrosis factor-activated receptor activity IBA
 molecular_functionGO:0005125 cytokine activity TAS
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
TNFs bind their physiological receptors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000164 Abnormality of the teeth "Any abnormality of the primary (deciduous) or permanent teeth." [HPO:curators]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000365 Hearing loss 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000488 Retinopathy 
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 HP:0000648 Optic atrophy 
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 HP:0000768 Pectus carinatum "A deformity of the chest caused by overgrowth of the ribs and characterized by protrusion of the sternum." [HPO:curators]
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0000889 Abnormality of the clavicles "Any abnormality of the clavicles (collar bones)." [HPO:curators]
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0000995 Pigmented nevi "The presence of increased numbers of pigmented nevi, that is, of small, dark spots on the skin. Pigmented nevi are also known as melanocytic nevi or moles." [HPO:curators]
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 HP:0001102 Angioid streaks 
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 HP:0001270 Motor retardation 
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001482 Subcutaneous nodules 
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 HP:0001552 Barrel-shaped chest 
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 HP:0002149 Hyperuricemia "An abnormally high level of uric acid in the blood." [HPO:curators]
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 HP:0002684 Thickened calvaria "The presence of an abnormally thick calvaria." [HPO:curators]
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 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
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 HP:0002808 Kyphosis 
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 HP:0002905 Hyperphosphatemia 
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 HP:0003080 Hydroxyprolinuria 
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 HP:0003148 Elevated serum acid phosphatase 
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 HP:0003155 Elevated alkaline phosphatase "Abnormally increased serum levels of `alkaline phosphatase activity` (GO:0004035)." [HPO:probinson]
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 HP:0003260 Hydroxyprolinemia 
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 HP:0003676 Progressive disorder 
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 HP:0003828 Variable expressivity 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004437 Cranial hyperostosis "Excessive growth of the cranial bones." [HPO:curators]
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 HP:0006480 Premature loss of teeth 
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 HP:0006487 Bowing of the long bones 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0011001 Increased bone mineral density "An abnormal increase of bone mineral density, that is, of the amount of matter per cubic centimeter of bones which is often refered to as osteosclerosis. Osteosclerosis can be detected on radiological examination as an increased whiteness (density) of affected bones." [HPO:curators]
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 HP:0031013 Ankylosis "A reduction of joint mobility resulting from changes involving the articular surfaces." []
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 HP:0100670 Rough bone trabeculation 
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 HP:0200056 Macular scarring 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000120659 O14788 / TNFSF11 / TNF superfamily member 11  / complex / reaction
 ENSG00000164761 O00300 / TNFRSF11B / TNF receptor superfamily member 11b  / complex / reaction






 

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