ENSG00000172482


Homo sapiens

Features
Gene ID: ENSG00000172482
  
Biological name :AGXT
  
Synonyms : AGXT / alanine-glyoxylate aminotransferase / P21549
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: q37.3
Gene start: 240868479
Gene end: 240880502
  
Corresponding Affymetrix probe sets: 206957_at (Human Genome U133 Plus 2.0 Array)   210326_at (Human Genome U133 Plus 2.0 Array)   210327_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000302620
NCBI entrez gene - 189     See in Manteia.
OMIM - 604285
RefSeq - NM_000030
RefSeq Peptide - NP_000021
swissprot - P21549
Ensembl - ENSG00000172482
  
Related genetic diseases (OMIM): 259900 - Hyperoxaluria, primary, type 1, 259900
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 agxtaENSDARG00000052099Danio rerio
 agxtbENSDARG00000018478Danio rerio
 AGXTENSGALG00000020943Gallus gallus
 AgxtENSMUSG00000026272Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000192  Aminotransferase class V domain
 IPR015421  Pyridoxal phosphate-dependent transferase, major domain
 IPR015422  Pyridoxal phosphate-dependent transferase domain 1
 IPR015424  Pyridoxal phosphate-dependent transferase
 IPR020578  Aminotransferase class-V, pyridoxal-phosphate binding site
 IPR024169  Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007219 Notch signaling pathway IEA
 biological_processGO:0009436 glyoxylate catabolic process IDA
 biological_processGO:0019265 glycine biosynthetic process, by transamination of glyoxylate IDA
 biological_processGO:0019448 L-cysteine catabolic process IDA
 biological_processGO:0034641 cellular nitrogen compound metabolic process TAS
 biological_processGO:0042853 L-alanine catabolic process IDA
 biological_processGO:0042866 pyruvate biosynthetic process IEA
 biological_processGO:0046487 glyoxylate metabolic process IMP
 biological_processGO:0046724 oxalic acid secretion IEA
 biological_processGO:0051384 response to glucocorticoid IEA
 biological_processGO:0051591 response to cAMP IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005759 mitochondrial matrix IEA
 cellular_componentGO:0005777 peroxisome IEA
 cellular_componentGO:0005782 peroxisomal matrix IDA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004760 serine-pyruvate transaminase activity IBA
 molecular_functionGO:0005102 signaling receptor binding IPI
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008453 alanine-glyoxylate transaminase activity TAS
 molecular_functionGO:0008483 transaminase activity IEA
 molecular_functionGO:0016597 amino acid binding IDA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0030170 pyridoxal phosphate binding IMP
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0042803 protein homodimerization activity IDA
 molecular_functionGO:0043621 protein self-association IDA


Pathways (from Reactome)
Pathway description
Glyoxylate metabolism and glycine degradation
Peroxisomal protein import


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000010 Recurrent urinary tract infections "Repeated infections of the urinary tract." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000121 Nephrocalcinosis 
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 HP:0000164 Abnormality of the teeth "Any abnormality of the primary (deciduous) or permanent teeth." [HPO:curators]
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 HP:0000488 Retinopathy 
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 HP:0000648 Optic atrophy 
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 HP:0000787 Kidney stones 
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 HP:0000790 Hematuria "The presence of blood in the urine. Hematuria may be gross hematuria (visible to the naked eye) or microscopic hematuria (detected by dipstick or microscopic examination of the urine)." [HPO:curators]
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 HP:0000805 Enuresis "Lack of the ability to control the urinary bladder leading to involuntary urination at an age where control of the bladder should already be possible." [HPO:sdoelken]
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 HP:0000924 Abnormality of the musculoskeletal system "An abnormality of the musculoskeletal system including one or more abnormalities affecting bones, muscles, cartilage, tendons, ligaments, joints, and other connective tissue." [HPO:curators]
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 HP:0000965 Cutis marmorata 
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 HP:0001063 Acrocyanosis 
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 HP:0001138 Optic neuropathy 
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 HP:0001297 Stroke 
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 HP:0001508 Failure to thrive 
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 HP:0001678 Atrioventricular block 
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 HP:0001903 Anemia 
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 HP:0001942 Metabolic acidosis 
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 HP:0002621 Atherosclerosis "A condition characterized by patchy atheromas or atherosclerotic plaques which develop in the walls of medium-sized and large arteries and can lead to arterial stenosis with reduced or blocked blood flow." [HPO:curators]
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 HP:0002653 Bone pain 
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 HP:0002756 Pathologic fracture "A pathologic fracture occurs when a bone breaks in an area that is weakened secondary to another disease process such as tumor, infection, and certain inherited bone disorders. A pathologic fracture can occur without a degree of trauma required to cause fracture in healthy bone." [HPO:curators]
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 HP:0003159 Hyperoxaluria 
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 HP:0003761 Calcinosis "Formation of calcium deposits in any soft tissue." [HPO:curators]
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 HP:0003774 End stage renal disease 
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 HP:0004417 Intermittent claudication 
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 HP:0004950 Peripheral arterial disease 
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 HP:0008672 Calcium oxalate nephrolithiasis 
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 HP:0009830 Peripheral neuropathy "Peripheral neuropathy is a general term for any disorder of the peripheral nervous system. The main clinical features used to classify peripheral neuropathy are distribution, type (mainly demyelinating versus mainly axonal), duration, and course." [HPO:curators]
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 HP:0011001 Increased bone mineral density "An abnormal increase of bone mineral density, that is, of the amount of matter per cubic centimeter of bones which is often refered to as osteosclerosis. Osteosclerosis can be detected on radiological examination as an increased whiteness (density) of affected bones." [HPO:curators]
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 HP:0011021 Abnormality of circulating enzyme level 
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 HP:0012213 Decreased glomerular filtration rate "An abnormal reduction in the volume of water filtered out of plasma through glomerular capillary walls into Bowman s capsules per unit of time." [HP:probinson]
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 HP:0025324 Arterial occlusion "Blockage of blood flow through an artery." []
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 HP:0030507 Retinal crystals 
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 HP:0030880 Raynaud phenomenon 
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 HP:0100518 Dysuria "Painful or difficult `urination` (GO:0060073)." [HPO:probinson]
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 HP:0100758 Gangrene "A serious and potentially life-threatening condition that arises when a considerable mass of body tissue dies (necrosis)." [ISBN:9780781770873]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000172482 AGXT / P21549 / alanine-glyoxylate aminotransferase  / complex






 

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