ENSG00000242419


Homo sapiens

Features
Gene ID: ENSG00000242419
  
Biological name :PCDHGC4
  
Synonyms : PCDHGC4 / protocadherin gamma subfamily C, 4 / Q9Y5F7
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q31.3
Gene start: 141484997
Gene end: 141512979
  
Corresponding Affymetrix probe sets: 205717_x_at (Human Genome U133 Plus 2.0 Array)   209079_x_at (Human Genome U133 Plus 2.0 Array)   211066_x_at (Human Genome U133 Plus 2.0 Array)   211876_x_at (Human Genome U133 Plus 2.0 Array)   215836_s_at (Human Genome U133 Plus 2.0 Array)   216352_x_at (Human Genome U133 Plus 2.0 Array)   231753_s_at (Human Genome U133 Plus 2.0 Array)   231754_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000306918
Ensembl peptide - ENSP00000483845
Ensembl peptide - ENSP00000478541
Ensembl peptide - ENSP00000478393
NCBI entrez gene - 56098     See in Manteia.
OMIM - 606305
RefSeq - NM_018928
RefSeq - NM_032406
RefSeq Peptide - NP_061751
RefSeq Peptide - NP_115782
swissprot - Q9Y5F7
swissprot - A0A087WU59
swissprot - A0A087WUC2
Ensembl - ENSG00000242419
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh1g26ENSDARG00000099931Danio rerio
 pcdh1g29ENSDARG00000104497Danio rerio
 pcdh1g33ENSDARG00000099035Danio rerio
 pcdh1gc5ENSDARG00000104826Danio rerio
 pcdh1gc6ENSDARG00000103950Danio rerio
 Pcdhgc4ENSMUSG00000023036Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9Y5F6 / PCDHGC5 / protocadherin gamma subfamily C, 5ENSG0000024076453
Q9Y5H4 / PCDHGA1 / protocadherin gamma subfamily A, 1ENSG0000020495646
Q9UN70 / PCDHGC3 / protocadherin gamma subfamily C, 3ENSG0000024018446
Q9Y5F9 / PCDHGB6 / protocadherin gamma subfamily B, 6ENSG0000025330545
Q9Y5G4 / PCDHGA9 / protocadherin gamma subfamily A, 9ENSG0000026193445
Q9Y5G2 / PCDHGB2 / protocadherin gamma subfamily B, 2ENSG0000025391044
Q9UN71 / PCDHGB4 / protocadherin gamma subfamily B, 4ENSG0000025395344
Q9Y5F8 / PCDHGB7 / protocadherin gamma subfamily B, 7ENSG0000025412244
Q9Y5G3 / PCDHGB1 / protocadherin gamma subfamily B, 1ENSG0000025422144
Q9Y5G1 / PCDHGB3 / protocadherin gamma subfamily B, 3ENSG0000026220944
Q9Y5G0 / PCDHGB5 / protocadherin gamma subfamily B, 5ENSG0000027654743
PCDHB3 / Q9Y5E6 / protocadherin beta 3ENSG0000011320533
PCDHB6 / Q9Y5E3 / protocadherin beta 6ENSG0000011321133
PCDHB2 / Q9Y5E7 / protocadherin beta 2ENSG0000011285232
PCDHB5 / Q9Y5E4 / protocadherin beta 5ENSG0000011320932
PCDHB7 / Q9Y5E2 / protocadherin beta 7ENSG0000011321232
PCDHB8 / Q9UN66 / protocadherin beta 8ENSG0000012032232
Q9Y5E9 / PCDHB14 / protocadherin beta 14ENSG0000012032732
Q9Y5F1 / PCDHB12 / protocadherin beta 12ENSG0000012032832
PCDHB1 / Q9Y5F3 / protocadherin beta 1ENSG0000017181532


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR030728  Protocadherin gamma-C3
 IPR031904  Cadherin, C-terminal catenin-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IBA
 biological_processGO:0050808 synapse organization IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr