ENSDARG00000104497


Danio rerio

Features
Gene ID: ENSDARG00000104497
  
Biological name :pcdh1g29
  
Synonyms : pcdh1g29 / protocadherin 1 gamma 29
  
Possible biological names infered from orthology : PCDHGC4 / PCDHGC5 / protocadherin gamma subfamily C, 4 / protocadherin gamma subfamily C, 5 / Q9Y5F6 / Q9Y5F7
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 21796477
Gene end: 21820133
  
Corresponding Affymetrix probe sets: Dr.8598.1.A1_at (Zebrafish Array)   NM_001024125_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000141562
Ensembl peptide - ENSDARP00000143523
NCBI entrez gene - 554013     See in Manteia.
RefSeq - NM_001024125
RefSeq Peptide - NP_001019296
swissprot - A0A286Y8Q2
swissprot - A0A0R4IZN0
ZFIN ID - ZDB-GENE-050609-22
Ensembl - ENSDARG00000104497
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q9Y5F6ENSG00000240764Homo sapiens
 Q9Y5F7ENSG00000242419Homo sapiens
 Pcdhgc4ENSMUSG00000023036Mus musculus
 Pcdhgc5ENSMUSG00000102543Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pcdh1gc6 / protocadherin 1 gamma c 6 / Q9Y5F6* / Q9Y5F7* / PCDHGC5* / PCDHGC4* / protocadherin gamma subfamily C, 4* / protocadherin gamma subfamily C, 5*ENSDARG0000010395088
pcdh1gc5 / pcdh1gc6 / protocadherin 1 gamma c 5 / Q9Y5F6* / Q9Y5F7* / PCDHGC5* / PCDHGC4* / protocadherin gamma subfamily C, 4* / protocadherin gamma subfamily C, 5*ENSDARG0000010482682
pcdh1g26 / protocadherin 1 gamma 26 / Q9Y5F6* / Q9Y5F7* / PCDHGC5* / PCDHGC4* / protocadherin gamma subfamily C, 4* / protocadherin gamma subfamily C, 5*ENSDARG0000009993181
pcdh1g33 / protocadherin 1 gamma 33 / Q9Y5F6* / Q9Y5F7* / PCDHGC5* / PCDHGC4* / protocadherin gamma subfamily C, 4* / protocadherin gamma subfamily C, 5*ENSDARG0000009903571
pcdh1g11 / protocadherin 1 gamma 11 / Q9Y5H4* / Q9UN71* / Q9Y5F8* / Q9Y5F9* / Q9Y5G0* / Q9Y5G1* / Q9Y5G2* / Q9Y5G3* / Q9Y5G4* / PCDHGB7* / Pcdhgb8* / PCDHGA1* / Pcdhga2* / PCDHGA9* / PCDHGB...ENSDARG0000010166546
pcdh1g1 / protocadherin 1 gamma 1 / Q9Y5H4* / Q9UN71* / Q9Y5F8* / Q9Y5F9* / Q9Y5G0* / Q9Y5G1* / Q9Y5G2* / Q9Y5G3* / Q9Y5G4* / PCDHGB7* / Pcdhgb8* / PCDHGA1* / Pcdhga2* / PCDHGA9* / PCDHGB1*...ENSDARG0000010400746
si:ch73-233f7.7 / Q9UN70* / PCDHGC3* / protocadherin gamma subfamily C, 3*ENSDARG0000009948734
si:ch73-233f7.3 / PCDHGC3 (1 of many) / Q9UN70* / PCDHGC3* / protocadherin gamma subfamily C, 3*ENSDARG0000010219834
pcdhb / protocadherin b / Q9UN70* / PCDHGC3* / protocadherin gamma subfamily C, 3*ENSDARG0000007702333
si:ch73-233f7.4 / PCDHGC3 (1 of many) / Q9UN70* / PCDHGC3* / protocadherin gamma subfamily C, 3*ENSDARG0000009856633
si:ch73-233f7.6 / PCDHGC3 (1 of many) / Q9UN70* / PCDHGC3* / protocadherin gamma subfamily C, 3*ENSDARG0000010166733
CT737184.2 / Q9Y5H4* / Q9UN71* / Q9Y5F8* / Q9Y5F9* / Q9Y5G0* / Q9Y5G1* / Q9Y5G2* / Q9Y5G3* / Q9Y5G4* / PCDHGB7* / PCDHGA1* / PCDHGA9* / PCDHGB1* / PCDHGB2* / PCDHGB3* / PCDHGB4* / PCDHGB5* ...ENSDARG0000011293033
BX957322.1 / Q9UN70* / PCDHGC3* / protocadherin gamma subfamily C, 3*ENSDARG0000008956232
pcdh1g14 / protocadherin 1 gamma 14 / Q9Y5H4* / Q9UN71* / Q9Y5F8* / Q9Y5F9* / Q9Y5G0* / Q9Y5G1* / Q9Y5G2* / Q9Y5G3* / Q9Y5G4* / PCDHGB7* / Pcdhgb8* / PCDHGA1* / Pcdhga2* / PCDHGA9* / PCDHGB...ENSDARG0000010405731
pcdh1g13 / protocadherin 1 gamma 13 / Q9Y5H4* / Q9UN71* / Q9Y5F8* / Q9Y5F9* / Q9Y5G0* / Q9Y5G1* / Q9Y5G2* / Q9Y5G3* / Q9Y5G4* / PCDHGB7* / Pcdhgb8* / PCDHGA1* / Pcdhga2* / PCDHGA9* / PCDHGB...ENSDARG0000009896330


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR031904  Cadherin, C-terminal catenin-binding domain
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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