Manteia

ENSDARG00000104826

Danio rerio

Features

Gene ID:	ENSDARG00000104826

Biological name :	pcdh1gc5

Synonyms :	pcdh1gc5 / pcdh1gc6 / protocadherin 1 gamma c 5

Possible biological names infered from orthology :	PCDHGC4 / PCDHGC5 / protocadherin gamma subfamily C, 4 / protocadherin gamma subfamily C, 5 / Q9Y5F6 / Q9Y5F7

Species:	Danio rerio

Chr. number:	10
Strand:	1
Band:
Gene start:	21789954
Gene end:	21820133

Corresponding Affymetrix probe sets:	Dr.8598.1.A1_at (Zebrafish Array) NM_001012656_at (Zebrafish Genome Array with custom cdf files)

Cross references:	Ensembl peptide - ENSDARP00000134484 Ensembl peptide - ENSDARP00000141693 NCBI entrez gene - 503571 See in Manteia. RefSeq - NM_001012656 RefSeq Peptide - NP_001012674 swissprot - A0A0R4IID2 swissprot - A0A0N4SUG2 ZFIN ID - ZDB-GENE-041118-16 ZFIN ID - ZDB-GENE-041118-17 Ensembl - ENSDARG00000104826

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name	ID	Species
Q9Y5F6	ENSG00000240764	Homo sapiens
Q9Y5F7	ENSG00000242419	Homo sapiens
Pcdhgc4	ENSMUSG00000023036	Mus musculus
Pcdhgc5	ENSMUSG00000102543	Mus musculus

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
pcdh1gc6 / protocadherin 1 gamma c 6 / Q9Y5F6* / Q9Y5F7* / PCDHGC5* / PCDHGC4* / protocadherin gamma subfamily C, 4* / protocadherin gamma subfamily C, 5*	ENSDARG00000103950	82
pcdh1g29 / protocadherin 1 gamma 29 / Q9Y5F6* / Q9Y5F7* / PCDHGC5* / PCDHGC4* / protocadherin gamma subfamily C, 4* / protocadherin gamma subfamily C, 5*	ENSDARG00000104497	81
pcdh1g26 / protocadherin 1 gamma 26 / Q9Y5F6* / Q9Y5F7* / PCDHGC5* / PCDHGC4* / protocadherin gamma subfamily C, 4* / protocadherin gamma subfamily C, 5*	ENSDARG00000099931	80
pcdh1g33 / protocadherin 1 gamma 33 / Q9Y5F6* / Q9Y5F7* / PCDHGC5* / PCDHGC4* / protocadherin gamma subfamily C, 4* / protocadherin gamma subfamily C, 5*	ENSDARG00000099035	73
pcdh1g11 / protocadherin 1 gamma 11 / Q9Y5H4* / Q9UN71* / Q9Y5F8* / Q9Y5F9* / Q9Y5G0* / Q9Y5G1* / Q9Y5G2* / Q9Y5G3* / Q9Y5G4* / PCDHGB7* / Pcdhgb8* / PCDHGA1* / Pcdhga2* / PCDHGA9* / PCDHGB...	ENSDARG00000101665	47
pcdh1g1 / protocadherin 1 gamma 1 / Q9Y5H4* / Q9UN71* / Q9Y5F8* / Q9Y5F9* / Q9Y5G0* / Q9Y5G1* / Q9Y5G2* / Q9Y5G3* / Q9Y5G4* / PCDHGB7* / Pcdhgb8* / PCDHGA1* / Pcdhga2* / PCDHGA9* / PCDHGB1*...	ENSDARG00000104007	44
pcdhb / protocadherin b / Q9UN70* / PCDHGC3* / protocadherin gamma subfamily C, 3*	ENSDARG00000077023	33
si:ch73-233f7.7 / Q9UN70* / PCDHGC3* / protocadherin gamma subfamily C, 3*	ENSDARG00000099487	33
si:ch73-233f7.3 / PCDHGC3 (1 of many) / Q9UN70* / PCDHGC3* / protocadherin gamma subfamily C, 3*	ENSDARG00000102198	33
si:ch73-233f7.4 / PCDHGC3 (1 of many) / Q9UN70* / PCDHGC3* / protocadherin gamma subfamily C, 3*	ENSDARG00000098566	32
si:ch73-233f7.6 / PCDHGC3 (1 of many) / Q9UN70* / PCDHGC3* / protocadherin gamma subfamily C, 3*	ENSDARG00000101667	32
CT737184.2 / Q9Y5H4* / Q9UN71* / Q9Y5F8* / Q9Y5F9* / Q9Y5G0* / Q9Y5G1* / Q9Y5G2* / Q9Y5G3* / Q9Y5G4* / PCDHGB7* / PCDHGA1* / PCDHGA9* / PCDHGB1* / PCDHGB2* / PCDHGB3* / PCDHGB4* / PCDHGB5* ...	ENSDARG00000112930	32
BX957322.1 / Q9UN70* / PCDHGC3* / protocadherin gamma subfamily C, 3*	ENSDARG00000089562	31
pcdh1g14 / protocadherin 1 gamma 14 / Q9Y5H4* / Q9UN71* / Q9Y5F8* / Q9Y5F9* / Q9Y5G0* / Q9Y5G1* / Q9Y5G2* / Q9Y5G3* / Q9Y5G4* / PCDHGB7* / Pcdhgb8* / PCDHGA1* / Pcdhga2* / PCDHGA9* / PCDHGB...	ENSDARG00000104057	30
pcdh1g13 / protocadherin 1 gamma 13 / Q9Y5H4* / Q9UN71* / Q9Y5F8* / Q9Y5F9* / Q9Y5G0* / Q9Y5G1* / Q9Y5G2* / Q9Y5G3* / Q9Y5G4* / PCDHGB7* / Pcdhgb8* / PCDHGA1* / Pcdhga2* / PCDHGA9* / PCDHGB...	ENSDARG00000098963	29

Protein motifs (from Interpro)

Interpro ID	Name
IPR002126	Cadherin
IPR013164	Cadherin, N-terminal
IPR015919	Cadherin-like
IPR020894	Cadherin conserved site
IPR031904	Cadherin, C-terminal catenin-binding domain
IPR032455	Cadherin, cytoplasmic C-terminal domain

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0007155	cell adhesion	IEA
biological_process	GO:0007156	homophilic cell adhesion via plasma membrane adhesion molecules	IEA
cellular_component	GO:0005886	plasma membrane	IEA
cellular_component	GO:0016020	membrane	IEA
cellular_component	GO:0016021	integral component of membrane	IEA
molecular_function	GO:0005509	calcium ion binding	IEA

Pathways (from Reactome)

Pathway description

No match

Phenotype (from MGI, Zfin or HPO)

Phenotype

Definition

Genetic BG

No match

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2025 contact: otassy@igbmc.fr