ENSGALG00000001171


Gallus gallus

Features
Gene ID: ENSGALG00000001171
  
Biological name :SEMA6B
  
Synonyms : Gallus gallus semaphorin 6B (SEMA6B), mRNA. / SEMA6B
  
Possible biological names infered from orthology : O54951 / Q9H3T3 / sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B / semaphorin 6B
  
Species: Gallus gallus
  
Chr. number: 28
Strand: -1
Band:
Gene start: 2574360
Gene end: 2580634
  
Corresponding Affymetrix probe sets: Gga.8958.1.S1_at (Chicken Array)   GgaAffx.772.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000001772
NCBI entrez gene - 428330     See in Manteia.
RefSeq - XM_015300016
RefSeq - NM_001319026
RefSeq - XM_015300014
RefSeq - XM_015300015
RefSeq - XM_015300012
RefSeq - XM_015300013
RefSeq Peptide - NP_001305955
swissprot - E1BV84
Ensembl - ENSGALG00000001171
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sema6baENSDARG00000036626Danio rerio
 sema6bbENSDARG00000061976Danio rerio
 Q9H3T3ENSG00000167680Homo sapiens
 O54951ENSMUSG00000001227Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SEMA6A / semaphorin 6A / O35464* / Q9H2E6*ENSGALG0000000229448
SEMA6D / semaphorin 6D / Q76KF0* / Q8NFY4*ENSGALG0000003054241
SEMA6C / semaphorin 6C / Q9H3T2* / Q9WTM3* / sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C*ENSGALG0000004531231
SEMA5B / semaphorin 5B / Q60519* / Q9P283*ENSGALG0000001168625
SEMA5A / semaphorin 5A / Q13591* / sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A*ENSGALG0000002868525
SEMA7A / semaphorin 7A (John Milton Hagen blood group) / O75326* / Q9QUR8* / Semaphorin-7A *ENSGALG0000000141213


Protein motifs (from Interpro)
Interpro ID Name
 IPR001627  Sema domain
 IPR002165  Plexin repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR016201  PSI domain
 IPR027231  Semaphorin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0030215 semaphorin receptor binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr