ENSGALG00000011686


Gallus gallus

Features
Gene ID: ENSGALG00000011686
  
Biological name :SEMA5B
  
Synonyms : SEMA5B / semaphorin 5B
  
Possible biological names infered from orthology : Q60519 / Q9P283
  
Species: Gallus gallus
  
Chr. number: 7
Strand: -1
Band:
Gene start: 26700264
Gene end: 26882259
  
Corresponding Affymetrix probe sets: GgaAffx.7448.1.S1_at (Chicken Array)   GgaAffx.7448.2.S1_s_at (Chicken Array)   GgaAffx.7448.3.S1_at (Chicken Array)   GgaAffx.7448.3.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000057331
Ensembl peptide - ENSGALP00000058161
Ensembl peptide - ENSGALP00000019082
Ensembl peptide - ENSGALP00000054807
NCBI entrez gene - 424248     See in Manteia.
RefSeq - XM_015289993
RefSeq - XM_015289990
RefSeq - XM_015289991
RefSeq - XM_015289992
RefSeq - XM_004942927
RefSeq - XM_004942929
RefSeq - XM_015289989
swissprot - A0A1D5PWJ8
swissprot - F1NSD7
swissprot - A0A1D5PPK6
Ensembl - ENSGALG00000011686
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sema5baENSDARG00000061471Danio rerio
 sema5bbENSDARG00000075648Danio rerio
 Q9P283ENSG00000082684Homo sapiens
 Q60519ENSMUSG00000052133Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SEMA5A / semaphorin 5A / Q13591* / sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A*ENSGALG0000002868559
SEMA6A / semaphorin 6A / O35464* / Q9H2E6*ENSGALG0000000229422
SEMA6D / semaphorin 6D / Q76KF0* / Q8NFY4*ENSGALG0000003054221
SEMA6B / Gallus gallus semaphorin 6B (SEMA6B), mRNA. / Q9H3T3* / O54951* / semaphorin 6B* / sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B*ENSGALG0000000117120
SEMA6C / semaphorin 6C / Q9H3T2* / Q9WTM3* / sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C*ENSGALG0000004531216
SEMA7A / semaphorin 7A (John Milton Hagen blood group) / O75326* / Q9QUR8* / Semaphorin-7A *ENSGALG0000000141213


Protein motifs (from Interpro)
Interpro ID Name
 IPR000884  Thrombospondin type-1 (TSP1) repeat
 IPR001627  Sema domain
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR016201  PSI domain
 IPR027231  Semaphorin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0048675 axon extension IEA
 biological_processGO:0050908 detection of light stimulus involved in visual perception IEA
 biological_processGO:0050919 negative chemotaxis IBA
 biological_processGO:0097485 neuron projection guidance IEA
 biological_processGO:1990138 neuron projection extension IEA
 cellular_componentGO:0005615 extracellular space IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0038191 neuropilin binding IBA


Pathways (from Reactome)
Pathway description
O-glycosylation of TSR domain-containing proteins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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