ENSDARG00000075648


Danio rerio

Features
Gene ID: ENSDARG00000075648
  
Biological name :sema5bb
  
Synonyms : sema5bb / sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5Bb
  
Possible biological names infered from orthology : Q60519 / Q9P283 / SEMA5B / semaphorin 5B
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 4033832
Gene end: 4146073
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000082095
Ensembl peptide - ENSDARP00000139247
NCBI entrez gene - 100000009     See in Manteia.
swissprot - A0A0R4IR66
swissprot - E7FEP0
ZFIN ID - ZDB-GENE-130530-778
Ensembl - ENSDARG00000075648
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SEMA5BENSGALG00000011686Gallus gallus
 Q9P283ENSG00000082684Homo sapiens
 Q60519ENSMUSG00000052133Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sema5ba / sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5Ba / SEMA5B* / Q60519* / Q9P283* / semaphorin 5B*ENSDARG0000006147171
sema5a / sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A / Q13591* / semaphorin 5A*ENSDARG0000005882152
sema6e / sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E / Q9WTM3* / SEMA6C* / Q9H3T2* / semaphorin 6C* / sema domain, transmembrane domain (TM), and cytopla...ENSDARG0000000018921
sema6dl / sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, like / SEMA6D* / Q76KF0* / Q8NFY4* / semaphorin 6D*ENSDARG0000001153320
sema6ba / sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Ba / Q9H3T3* / SEMA6B* / O54951* / semaphorin 6B* / sema domain, transmembrane domain (TM), and cytop...ENSDARG0000003662620
sema6d / sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D / Q9WTM3* / SEMA6C* / Q9H3T2* / semaphorin 6C* / sema domain, transmembrane domain (TM), and cytopla...ENSDARG0000000274819
sema6bb / sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Bb / Q9H3T3* / SEMA6B* / O54951* / semaphorin 6B* / sema domain, transmembrane domain (TM), and cytop...ENSDARG0000006197618
sema7a / semaphorin 7A / O75326* / Q9QUR8* / semaphorin 7A (John Milton Hagen blood group)*ENSDARG0000007870712
si:ch211-113g11.6ENSDARG0000007044210


Protein motifs (from Interpro)
Interpro ID Name
 IPR000884  Thrombospondin type-1 (TSP1) repeat
 IPR001627  Sema domain
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR016201  PSI domain
 IPR027231  Semaphorin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0050919 negative chemotaxis IBA
 cellular_componentGO:0005615 extracellular space IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0038191 neuropilin binding IBA


Pathways (from Reactome)
Pathway description
O-glycosylation of TSR domain-containing proteins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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