ENSDARG00000002748


Danio rerio

Features
Gene ID: ENSDARG00000002748
  
Biological name :sema6d
  
Synonyms : sema6d / sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
  
Possible biological names infered from orthology : Q9H3T2 / Q9WTM3 / SEMA6C / sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C / semaphorin 6C
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 390298
Gene end: 417381
  
Corresponding Affymetrix probe sets: Dr.6935.1.S1_at (Zebrafish Array)   NM_212999_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000121171
NCBI entrez gene - 406272     See in Manteia.
RefSeq - NM_212999
RefSeq Peptide - NP_998164
swissprot - B8JMB1
ZFIN ID - ZDB-GENE-040426-1933
Ensembl - ENSDARG00000002748
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SEMA6CENSGALG00000045312Gallus gallus
 Q9H3T2ENSG00000143434Homo sapiens
 Q9WTM3ENSMUSG00000038777Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sema6e / sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E / Q9WTM3* / SEMA6C* / Q9H3T2* / semaphorin 6C* / sema domain, transmembrane domain (TM), and cytopla...ENSDARG0000000018960
sema6dl / sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, like / SEMA6D* / Q76KF0* / Q8NFY4* / semaphorin 6D*ENSDARG0000001153345
sema6ba / sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Ba / Q9H3T3* / SEMA6B* / O54951* / semaphorin 6B* / sema domain, transmembrane domain (TM), and cytop...ENSDARG0000003662634
sema6bb / sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Bb / Q9H3T3* / SEMA6B* / O54951* / semaphorin 6B* / sema domain, transmembrane domain (TM), and cytop...ENSDARG0000006197630
sema5ba / sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5Ba / SEMA5B* / Q60519* / Q9P283* / semaphorin 5B*ENSDARG0000006147124
sema5a / sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A / Q13591* / semaphorin 5A*ENSDARG0000005882123
sema5bb / sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5Bb / SEMA5B* / Q60519* / Q9P283* / semaphorin 5B*ENSDARG0000007564823
sema7a / semaphorin 7A / O75326* / Q9QUR8* / semaphorin 7A (John Milton Hagen blood group)*ENSDARG0000007870714
si:ch211-113g11.6ENSDARG0000007044211


Protein motifs (from Interpro)
Interpro ID Name
 IPR001627  Sema domain
 IPR015514  Semaphorin 6C
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR027231  Semaphorin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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