ENSGALG00000005180


Gallus gallus

Features
Gene ID: ENSGALG00000005180
  
Biological name :COL11A1
  
Synonyms : COL11A1 / collagen type XI alpha 1 chain
  
Possible biological names infered from orthology : Collagen alpha-1(XI) chain / P12107 / Q61245
  
Species: Gallus gallus
  
Chr. number: 8
Strand: 1
Band:
Gene start: 11178211
Gene end: 11316534
  
Corresponding Affymetrix probe sets: Gga.3562.1.S1_at (Chicken Array)   Gga.9758.1.S1_s_at (Chicken Array)   GgaAffx.26432.1.S1_s_at (Chicken Array)   GgaAffx.26432.2.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000008307
Ensembl peptide - ENSGALP00000057063
Ensembl peptide - ENSGALP00000060350
swissprot - A0A1D5PVT6
swissprot - A0A1L1RNI7
swissprot - F1P4K9
Ensembl - ENSGALG00000005180
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col11a1aENSDARG00000026165Danio rerio
 col11a1bENSDARG00000009014Danio rerio
 P12107ENSG00000060718Homo sapiens
 Q61245ENSMUSG00000027966Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL5A1 / collagen alpha-1(V) chain precursor / P20908* / O88207* / Collagen alpha-1(V) chain * / collagen type V alpha 1 chain*ENSGALG0000000254685
COL1A2 / P02467 / Collagen alpha-2(I) chain / P08123* / Q01149* / collagen type I alpha 2 chain*ENSGALG0000000964145
COL5A2 / collagen type V alpha 2 chain / P05997* / Q3U962* / Collagen alpha-2(V) chain *ENSGALG0000003111245
COL3A1 / collagen type III alpha 1 chain / P02461* / P08121* / Collagen alpha-1(III) chain *ENSGALG0000003558445
COL24A1 / collagen type XXIV alpha 1 chain / Q17RW2* / Q30D77* / Collagen alpha-1(XXIV) chain *ENSGALG0000000686430


Protein motifs (from Interpro)
Interpro ID Name
 IPR000885  Fibrillar collagen, C-terminal
 IPR001791  Laminin G domain
 IPR008160  Collagen triple helix repeat
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001502 cartilage condensation IEA
 biological_processGO:0002063 chondrocyte development IEA
 biological_processGO:0003007 heart morphogenesis IEA
 biological_processGO:0006029 proteoglycan metabolic process IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0007605 sensory perception of sound IEA
 biological_processGO:0030199 collagen fibril organization IEA
 biological_processGO:0035987 endodermal cell differentiation IEA
 biological_processGO:0035989 tendon development IEA
 biological_processGO:0042472 inner ear morphogenesis IEA
 biological_processGO:0048704 embryonic skeletal system morphogenesis IEA
 biological_processGO:0048705 skeletal system morphogenesis IEA
 biological_processGO:0050910 detection of mechanical stimulus involved in sensory perception of sound IEA
 biological_processGO:0051216 cartilage development IEA
 biological_processGO:0055010 ventricular cardiac muscle tissue morphogenesis IEA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005592 collagen type XI trimer IEA
 cellular_componentGO:0005615 extracellular space IEA
 molecular_functionGO:0005201 extracellular matrix structural constituent IEA


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr