ENSGALG00000031112


Gallus gallus

Features
Gene ID: ENSGALG00000031112
  
Biological name :COL5A2
  
Synonyms : COL5A2 / collagen type V alpha 2 chain
  
Possible biological names infered from orthology : Collagen alpha-2(V) chain / P05997 / Q3U962
  
Species: Gallus gallus
  
Chr. number: 7
Strand: 1
Band:
Gene start: 470717
Gene end: 578692
  
Corresponding Affymetrix probe sets: Gga.15246.1.S1_at (Chicken Array)   Gga.3040.1.S1_at (Chicken Array)   GgaAffx.25521.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000048442
NCBI entrez gene - 423986     See in Manteia.
RefSeq - XM_004942396
RefSeq - XM_015289202
RefSeq - XM_015289203
swissprot - A0A1D5P6W1
Ensembl - ENSGALG00000031112
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col5a2aENSDARG00000031678Danio rerio
 col5a2bENSDARG00000024847Danio rerio
 COL5A2ENSG00000204262Homo sapiens
 Col5a2ENSMUSG00000026042Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL3A1 / collagen type III alpha 1 chain / P02461* / P08121* / Collagen alpha-1(III) chain *ENSGALG0000003558454
COL1A2 / P02467 / Collagen alpha-2(I) chain / P08123* / Q01149* / collagen type I alpha 2 chain*ENSGALG0000000964153
COL5A1 / collagen alpha-1(V) chain precursor / P20908* / O88207* / Collagen alpha-1(V) chain * / collagen type V alpha 1 chain*ENSGALG0000000254643
COL11A1 / collagen type XI alpha 1 chain / P12107* / Q61245* / Collagen alpha-1(XI) chain *ENSGALG0000000518027
COL24A1 / collagen type XXIV alpha 1 chain / Q17RW2* / Q30D77* / Collagen alpha-1(XXIV) chain *ENSGALG0000000686427


Protein motifs (from Interpro)
Interpro ID Name
 IPR000885  Fibrillar collagen, C-terminal
 IPR001007  VWFC domain
 IPR008160  Collagen triple helix repeat
 IPR014716  Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development IEA
 biological_processGO:0030199 collagen fibril organization IEA
 biological_processGO:0043588 skin development IEA
 biological_processGO:0048592 eye morphogenesis IEA
 biological_processGO:0071230 cellular response to amino acid stimulus IEA
 biological_processGO:1903225 negative regulation of endodermal cell differentiation IEA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005588 collagen type V trimer IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 molecular_functionGO:0005201 extracellular matrix structural constituent IEA
 molecular_functionGO:0046332 SMAD binding IEA


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Assembly of collagen fibrils and other multimeric structures


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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