ENSGALG00000006626


Gallus gallus

Features
Gene ID: ENSGALG00000006626
  
Biological name :PDE6C
  
Synonyms : cone cGMP-specific 3,5-cyclic phosphodiesterase subunit alpha / PDE6C
  
Possible biological names infered from orthology : P51160 / phosphodiesterase 6C / Q91ZQ1
  
Species: Gallus gallus
  
Chr. number: 6
Strand: -1
Band:
Gene start: 20345450
Gene end: 20374060
  
Corresponding Affymetrix probe sets: Gga.492.1.A1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000010688
NCBI entrez gene - 395834     See in Manteia.
RefSeq - XM_015288578
RefSeq - NM_204986
RefSeq - XM_015288576
RefSeq - XM_015288577
RefSeq - XM_015288575
RefSeq Peptide - NP_990317
swissprot - F1P429
Ensembl - ENSGALG00000006626
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pde6cENSDARG00000100397Danio rerio
 PDE6CENSG00000095464Homo sapiens
 Pde6cENSMUSG00000024992Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PDE6B / Gallus gallus phosphodiesterase 6B (PDE6B), mRNA. / P35913* / P23440* / phosphodiesterase 6B* / phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide*ENSGALG0000001537365
PDE5A / Gallus gallus phosphodiesterase 5A (PDE5A), mRNA. / O76074* / Q8CG03* / phosphodiesterase 5A* / cGMP-specific 3,5-cyclic phosphodiesterase *ENSGALG0000001198229
P0C1Q2* / PDE11A* / Q9HCR9* / phosphodiesterase 11A* / Dual 3,5-cyclic-AMP and -GMP phosphodiesterase 11A *ENSGALG0000004237429
PDE10A / phosphodiesterase 10A / Q8CA95* / Q9Y233*ENSGALG0000001153722
PDE3A / phosphodiesterase 3A / Q14432* / Q9Z0X4* / phosphodiesterase 3A, cGMP inhibited*ENSGALG0000001314317
PDE3B / cGMP-inhibited 3,5-cyclic phosphodiesterase B / Q13370* / phosphodiesterase 3B*ENSGALG0000000603516
PDE9A / phosphodiesterase 9A / O70628* / O76083* / High affinity cGMP-specific 3,5-cyclic phosphodiesterase 9A *ENSGALG0000001618610


Protein motifs (from Interpro)
Interpro ID Name
 IPR002073  3"5"-cyclic nucleotide phosphodiesterase, catalytic domain
 IPR003018  GAF domain
 IPR003607  HD/PDEase domain
 IPR023088  3"5"-cyclic nucleotide phosphodiesterase
 IPR023174  3"5"-cyclic nucleotide phosphodiesterase, conserved site
 IPR029016  GAF-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0007603 phototransduction, visible light IEA
 biological_processGO:0046549 retinal cone cell development IEA
 biological_processGO:0050953 sensory perception of light stimulus IEA
 molecular_functionGO:0004114 3",5"-cyclic-nucleotide phosphodiesterase activity IEA
 molecular_functionGO:0008081 phosphoric diester hydrolase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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