ENSGALG00000007370


Gallus gallus

Features
Gene ID: ENSGALG00000007370
  
Biological name :CLP1
  
Synonyms : CLP1 / Polyribonucleotide 5-hydroxyl-kinase Clp1 / Q5ZJL4
  
Possible biological names infered from orthology : cleavage and polyadenylation factor I subunit 1 / Q92989 / Q99LI9
  
Species: Gallus gallus
  
Chr. number: 5
Strand: -1
Band:
Gene start: 16996870
Gene end: 16999139
  
Corresponding Affymetrix probe sets: Gga.2011.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000011907
NCBI entrez gene - 423131     See in Manteia.
RefSeq - NM_001012292
RefSeq Peptide - NP_001012292
swissprot - Q5ZJL4
Ensembl - ENSGALG00000007370
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 clp1ENSDARG00000063663Danio rerio
 CLP1ENSG00000172409Homo sapiens
 Clp1ENSMUSG00000027079Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR010655  Pre-mRNA cleavage complex subunit Clp1, C-terminal
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR028606  Polyribonucleotide 5-hydroxyl-kinase Clp1
 IPR032319  Polyribonucleotide 5"-hydroxyl-kinase Clp1, P-loop domain
 IPR032324  Clp1, N-terminal beta-sandwich domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006378 mRNA polyadenylation IBA
 biological_processGO:0006379 mRNA cleavage IBA
 biological_processGO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0016310 phosphorylation IEA
 biological_processGO:0021695 cerebellar cortex development IEA
 biological_processGO:0030423 targeting of mRNA for destruction involved in RNA interference IEA
 biological_processGO:0031124 mRNA 3"-end processing IEA
 biological_processGO:0035087 siRNA loading onto RISC involved in RNA interference IEA
 cellular_componentGO:0000214 tRNA-intron endonuclease complex IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005849 mRNA cleavage factor complex IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016301 kinase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046404 ATP-dependent polydeoxyribonucleotide 5"-hydroxyl-kinase activity IEA
 molecular_functionGO:0051731 polynucleotide 5"-hydroxyl-kinase activity IBA
 molecular_functionGO:0051733 polydeoxyribonucleotide kinase activity IEA
 molecular_functionGO:0051736 ATP-dependent polyribonucleotide 5"-hydroxyl-kinase activity IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
mRNA Splicing - Major Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000003084 NUDT21 / nudix hydrolase 21 / O43809* / Q9CQF3* / nudix (nucleoside diphosphate linked moiety X)-type motif 21*  / complex
 ENSGALG00000017249 PCF11* / O94913* / PCF11 cleavage and polyadenylation factor subunit*  / complex






 

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