ENSGALG00000009288


Gallus gallus

Features
Gene ID: ENSGALG00000009288
  
Biological name :RNPS1
  
Synonyms : RNA binding protein with serine rich domain 1 / RNPS1
  
Possible biological names infered from orthology : Q15287 / Q99M28
  
Species: Gallus gallus
  
Chr. number: 14
Strand: -1
Band:
Gene start: 13857730
Gene end: 13867810
  
Corresponding Affymetrix probe sets: GgaAffx.5848.1.S1_at (Chicken Array)   GgaAffx.5852.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000015093
Ensembl peptide - ENSGALP00000061718
Ensembl peptide - ENSGALP00000053661
NCBI entrez gene - 416756     See in Manteia.
RefSeq - XM_004945441
RefSeq - XM_415051
swissprot - E1BV45
swissprot - A0A1L1RSD6
swissprot - A0A1D5PLE5
Ensembl - ENSGALG00000009288
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FO904885.3ENSDARG00000116743Danio rerio
 RNPS1ENSG00000205937Homo sapiens
 Rnps1ENSMUSG00000034681Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IEA
 biological_processGO:0043065 positive regulation of apoptotic process IEA
 biological_processGO:0048025 negative regulation of mRNA splicing, via spliceosome IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0061574 ASAP complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA 3-end processing
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000016815 UPF3A / UPF3A, regulator of nonsense mediated mRNA decay / Q9H1J1* / UPF3 regulator of nonsense transcripts homolog A (yeast)*  / complex
 ENSGALG00000010689 MAGOH / P50594 / Protein mago nashi homolog / Q96A72* / MAGOHB* / mago homolog B, exon junction complex core component*  / complex
 ENSGALG00000008530 Q5ZM36 / EIF4A3 / Eukaryotic initiation factor 4A-III / Q91VC3* / Gm5580* / Gm8994* / P38919* / eukaryotic translation initiation factor 4A3* / Eukaryotic initiation factor 4A-III Eukaryot...  / complex
 ENSGALG00000031813 CASC3 / cancer susceptibility 3 / O15234* / Q8K3W3* / Protein CASC3 *  / complex
 ENSGALG00000033772 UPF2 / UPF2, regulator of nonsense mediated mRNA decay / Q9HAU5* / UPF2 regulator of nonsense transcripts homolog (yeast)*  / complex






 

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