ENSGALG00000010485


Gallus gallus

Features
Gene ID: ENSGALG00000010485
  
Biological name :ALKBH1
  
Synonyms : ALKBH1 / alkB homolog 1, histone H2A dioxygenase
  
Possible biological names infered from orthology : Nucleic acid dioxygenase ALKBH1 / P0CB42 / Q13686
  
Species: Gallus gallus
  
Chr. number: 5
Strand: -1
Band:
Gene start: 39389910
Gene end: 39402770
  
Corresponding Affymetrix probe sets: GgaAffx.6632.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000017055
NCBI entrez gene - 428898     See in Manteia.
RefSeq - NM_001031552
RefSeq - XM_015287550
RefSeq Peptide - NP_001026723
swissprot - Q5F3E4
Ensembl - ENSGALG00000010485
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 alkbh1ENSDARG00000071164Danio rerio
 ALKBH1ENSG00000100601Homo sapiens
 Alkbh1ENSMUSG00000079036Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004574  Alkylated DNA repair protein AlkB
 IPR005123  Oxoglutarate/iron-dependent dioxygenase
 IPR027450  Alpha-ketoglutarate-dependent dioxygenase AlkB-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0001764 neuron migration IEA
 biological_processGO:0001890 placenta development IEA
 biological_processGO:0002101 tRNA wobble cytosine modification IEA
 biological_processGO:0006281 DNA repair IBA
 biological_processGO:0006307 DNA dealkylation involved in DNA repair IEA
 biological_processGO:0006446 regulation of translational initiation IEA
 biological_processGO:0006448 regulation of translational elongation IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0031175 neuron projection development IEA
 biological_processGO:0035552 oxidative single-stranded DNA demethylation IBA
 biological_processGO:0042245 RNA repair IEA
 biological_processGO:0043524 negative regulation of neuron apoptotic process IEA
 biological_processGO:0048589 developmental growth IEA
 biological_processGO:0050918 positive chemotaxis IEA
 biological_processGO:0055114 oxidation-reduction process IEA
 biological_processGO:0070129 regulation of mitochondrial translation IEA
 biological_processGO:0070989 oxidative demethylation IEA
 biological_processGO:0080111 DNA demethylation IEA
 biological_processGO:1990983 tRNA demethylation IEA
 cellular_componentGO:0005719 nuclear euchromatin IEA
 cellular_componentGO:0005739 mitochondrion IEA
 molecular_functionGO:0000049 tRNA binding IEA
 molecular_functionGO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEA
 molecular_functionGO:0008198 ferrous iron binding IEA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors IEA
 molecular_functionGO:0042056 chemoattractant activity IEA
 molecular_functionGO:0043734 DNA-N1-methyladenine dioxygenase activity IBA
 molecular_functionGO:0070579 methylcytosine dioxygenase activity IEA
 molecular_functionGO:1990984 tRNA demethylase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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