ENSGALG00000012906


Gallus gallus

Features
Gene ID: ENSGALG00000012906
  
Biological name :CDH20
  
Synonyms : Cadherin-20 / CDH20 / Q8QGH3
  
Possible biological names infered from orthology : Q9HBT6 / Q9Z0M3
  
Species: Gallus gallus
  
Chr. number: 2
Strand: -1
Band:
Gene start: 68849329
Gene end: 68961557
  
Corresponding Affymetrix probe sets: Gga.18634.1.A1_at (Chicken Array)   Gga.18634.1.S1_at (Chicken Array)   Gga.3665.1.S1_a_at (Chicken Array)   Gga.3665.1.S2_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000056375
Ensembl peptide - ENSGALP00000021013
NCBI entrez gene - 373927     See in Manteia.
RefSeq - XM_015282161
RefSeq - NM_204134
RefSeq - XM_015282158
RefSeq - XM_015282159
RefSeq - XM_015282160
RefSeq Peptide - NP_989465
swissprot - A0A1D5PTX5
swissprot - Q8QGH3
swissprot - R9PXP7
Ensembl - ENSGALG00000012906
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CDH20ENSG00000101542Homo sapiens
 Cdh20ENSMUSG00000050840Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CDH7 / cadherin-7 precursor / Q8BM92* / Q9ULB5* / cadherin 7*ENSGALG0000001378261
CDH6 / Q90762 / Cadherin-6 / P55285* / P97326*ENSGALG0000001291758
CDH10 / cadherin-10 precursor / P70408* / Q9Y6N8* / cadherin 10*ENSGALG0000003202257
CDH9 / cadherin 9 / Q9ULB4*ENSGALG0000001292356
CDH18 / cadherin 18 / Q13634*ENSGALG0000003609756
CDH11 / cadherin-11 precursor / P55287* / P55288* / cadherin 11*ENSGALG0000003998556
CDH8 / cadherin-8 / P55286* / P97291*ENSGALG0000000531955
CDH12 / cadherin 12 / P55289* / Q5RJH3*ENSGALG0000001294154
CDH22 / cadherin 22 / Q9UJ99* / Q9WTP5*ENSGALG0000000721151
CDH19 / cadherin-19 precursor / Q9H159* / cadherin 19* / cadherin 19, type 2*ENSGALG0000001377549


Protein motifs (from Interpro)
Interpro ID Name
 IPR000233  Cadherin, cytoplasmic domain
 IPR002126  Cadherin
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR027397  Catenin binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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