ENSGALG00000012917


Gallus gallus

Features
Gene ID: ENSGALG00000012917
  
Biological name :CDH6
  
Synonyms : Cadherin-6 / CDH6 / Q90762
  
Possible biological names infered from orthology : P55285 / P97326
  
Species: Gallus gallus
  
Chr. number: 2
Strand: -1
Band:
Gene start: 69532901
Gene end: 69629569
  
Corresponding Affymetrix probe sets: GgaAffx.21819.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000030382
NCBI entrez gene - 414842     See in Manteia.
RefSeq - NM_001001758
RefSeq Peptide - NP_001001758
swissprot - Q90762
Ensembl - ENSGALG00000012917
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cdh10aENSDARG00000055843Danio rerio
 cdh6ENSDARG00000014522Danio rerio
 LO017650.1ENSDARG00000103903Danio rerio
 CDH6ENSG00000113361Homo sapiens
 Cdh6ENSMUSG00000039385Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CDH9 / cadherin 9 / Q9ULB4*ENSGALG0000001292374
CDH10 / cadherin-10 precursor / P70408* / Q9Y6N8* / cadherin 10*ENSGALG0000003202274
CDH12 / cadherin 12 / P55289* / Q5RJH3*ENSGALG0000001294162
CDH7 / cadherin-7 precursor / Q8BM92* / Q9ULB5* / cadherin 7*ENSGALG0000001378261
CDH20 / Q8QGH3 / Cadherin-20 / Q9HBT6* / Q9Z0M3*ENSGALG0000001290659
CDH11 / cadherin-11 precursor / P55287* / P55288* / cadherin 11*ENSGALG0000003998559
CDH8 / cadherin-8 / P55286* / P97291*ENSGALG0000000531957
CDH18 / cadherin 18 / Q13634*ENSGALG0000003609757
CDH22 / cadherin 22 / Q9UJ99* / Q9WTP5*ENSGALG0000000721149
CDH19 / cadherin-19 precursor / Q9H159* / cadherin 19* / cadherin 19, type 2*ENSGALG0000001377549


Protein motifs (from Interpro)
Interpro ID Name
 IPR000233  Cadherin, cytoplasmic domain
 IPR002126  Cadherin
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR027397  Catenin binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007219 Notch signaling pathway IEA
 cellular_componentGO:0005623 cell IDA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Adherens junctions interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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