ENSGALG00000012985


Gallus gallus

Features
Gene ID: ENSGALG00000012985
  
Biological name :SLC6A13
  
Synonyms : SLC6A13 / solute carrier family 6 member 13
  
Possible biological names infered from orthology : P31649 / Q9NSD5 / Sodium- and chloride-dependent GABA transporter 2
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 60262382
Gene end: 60287559
  
Corresponding Affymetrix probe sets: GgaAffx.8228.5.S1_at (Chicken Array)   GgaAffx.8228.5.S1_s_at (Chicken Array)   GgaAffx.8228.6.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000021166
NCBI entrez gene - 100858230     See in Manteia.
RefSeq - XM_003640400
RefSeq - XM_004937926
swissprot - F1NN76
Ensembl - ENSGALG00000012985
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SLC6A13ENSDARG00000067567Danio rerio
 Q9NSD5ENSG00000010379Homo sapiens
 P31649ENSMUSG00000030108Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SLC6A12 / solute carrier family 6 member 12 / P48065* / solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12*ENSGALG0000001929071
SLC6A11 / solute carrier family 6 member 11 / P31650* / P48066* / Sodium- and chloride-dependent GABA transporter 3 *ENSGALG0000000487969
SLC6A6 / solute carrier family 6 member 6 / O35316* / P31641* / solute carrier family 6 (neurotransmitter transporter, taurine), member 6*ENSGALG0000000642561
P48029* / Q8VBW1* / SLC6A8* / solute carrier family 6 member 8* / solute carrier family 6 (neurotransmitter transporter, creatine), member 8*ENSGALG0000004141954
ENSGALG0000001929152
SLC6A1 / solute carrier family 6 member 1 / P30531* / P31648* / Sodium- and chloride-dependent GABA transporter 1 *ENSGALG0000000492147
SLC6A2 / solute carrier family 6 member 2 / O55192* / P23975* / solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2*ENSGALG0000000356043
SLC6A5 / solute carrier family 6 member 5 / Q9Y345* / solute carrier family 6 (neurotransmitter transporter, glycine), member 5*ENSGALG0000000390843
SLC6A7 / solute carrier family 6 member 7 / Q6PGE7* / Q99884* / Sodium-dependent proline transporter *ENSGALG0000000567243
SLC6A9 / sodium- and chloride-dependent glycine transporter 1 / P28571* / P48067* / solute carrier family 6 member 9*ENSGALG0000001009842
SLC6A4 / sodium-dependent serotonin transporter / P31645* / Q60857* / solute carrier family 6 member 4*ENSGALG0000000424641
SLC6A14 / solute carrier family 6 member 14 / Q9JMA9* / Q9UN76* / Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+) *ENSGALG0000000595740
ENSGALG0000002798239


Protein motifs (from Interpro)
Interpro ID Name
 IPR000175  Sodium:neurotransmitter symporter
 IPR002981  Sodium:neurotransmitter symporter, GABA, GAT-2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006836 neurotransmitter transport IEA
 biological_processGO:0015812 gamma-aminobutyric acid transport IEA
 biological_processGO:0055085 transmembrane transport IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005215 transporter activity IBA
 molecular_functionGO:0005328 neurotransmitter:sodium symporter activity IEA
 molecular_functionGO:0005332 gamma-aminobutyric acid:sodium symporter activity IEA
 molecular_functionGO:0015293 symporter activity IEA


Pathways (from Reactome)
Pathway description
Na+/Cl- dependent neurotransmitter transporters
Reuptake of GABA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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