ENSGALG00000013431


Gallus gallus

Features
Gene ID: ENSGALG00000013431
  
Biological name :RAX2
  
Synonyms : Q9PVY0 / RAX2 / Retinal homeobox protein Rx1
  
Possible biological names infered from orthology : Q96IS3 / retina and anterior neural fold homeobox 2
  
Species: Gallus gallus
  
Chr. number: 28
Strand: 1
Band:
Gene start: 962067
Gene end: 965960
  
Corresponding Affymetrix probe sets: Gga.27.2.S1_at (Chicken Array)   Gga.27.2.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000031663
NCBI entrez gene - 373893     See in Manteia.
RefSeq - NM_204104
RefSeq Peptide - NP_989435
swissprot - Q9PVY0
Ensembl - ENSGALG00000013431
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rx1ENSDARG00000071684Danio rerio
 rx2ENSDARG00000040321Danio rerio
 RAX2ENSG00000173976Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RAX / retina and anterior neural fold homeobox / O35602* / Q9Y2V3* / Retinal homeobox protein Rx *ENSGALG0000003327942
ARX / aristaless related homeobox / O35085* / Q96QS3* / Homeobox protein ARX *ENSGALG0000004260435
ALX4 / ALX homeobox 4 / O35137* / Q9H161* / Homeobox protein aristaless-like 4 *ENSGALG0000003258431
ALX1 / ALX homeobox 1 / Q15699* / Q8C8B0* / ALX homeobox protein 1 *ENSGALG0000002721330
VSX2 / visual system homeobox 2 / P58304* / Q61412*ENSGALG0000003351730
ENSGALG0000004658428
PHOX2B / paired like homeobox 2b / O35690* / Q99453* / Paired mesoderm homeobox protein 2B *ENSGALG0000001425026
DRGX / dorsal root ganglia homeobox / A6NNA5* / Prrxl1* / Q8BYH0* / paired related homeobox protein-like 1*ENSGALG0000003082226
VSX1 / visual system homeobox 1 / Q91V10* / Q9NZR4*ENSGALG0000003757625
ISX / intestine specific homeobox / A1A546* / Q2M1V0*ENSGALG0000001255723
UNCX / UNC homeobox / A6NJT0* / O08934*ENSGALG0000003929223
ALX3 / ALX homeobox 3 / O70137* / O95076* / Homeobox protein aristaless-like 3 *ENSGALG0000002586722


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR003654  OAR domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0043010 camera-type eye development IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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