ENSGALG00000015599


Gallus gallus

Features
Gene ID: ENSGALG00000015599
  
Biological name :SOHO-1
  
Synonyms : sensory organ homeobox protein SOHo / SOHO-1
  
Possible biological names infered from orthology : H6 family homeobox 1 / HMX1 / Homeobox protein HMX1 / O70218 / Q9NP08
  
Species: Gallus gallus
  
Chr. number: 4
Strand: -1
Band:
Gene start: 81976947
Gene end: 81979176
  
Corresponding Affymetrix probe sets: Gga.770.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000025106
NCBI entrez gene - 396346     See in Manteia.
RefSeq - NM_205386
RefSeq Peptide - NP_990717
swissprot - F1NDR6
Ensembl - ENSGALG00000015599
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HMX1ENSG00000215612Homo sapiens
 Hmx1ENSMUSG00000067438Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HMX1 / homeobox protein HMX1 ENSGALG0000004206233
HMX3 / homeobox protein HMX3 / A6NHT5* / P42581* / H6 family homeobox 3*ENSGALG0000002341529
HMX2 / H6 family homeobox 2 / A2RU54* / P43687* / Homeobox protein HMX2 *ENSGALG0000003087525
NKX3-2 / homeobox protein Nkx-3.2 / P78367* / P97503* / NK3 homeobox 2*ENSGALG0000003185920
NKX2-5 / homeobox protein Nkx-2.5 ENSGALG0000000288618
NKX2-3 / NK2 homeobox 3 / P97334* / Q8TAU0* / Homeobox protein Nkx-2.3 *ENSGALG0000003093218
NKX2-6 / homeobox protein Nkx-2.6 ENSGALG0000000036517
NKX2-4 / NK2 homeobox 4 / Q9EQM3* / Q9H2Z4* / Homeobox protein Nkx-2.4 *ENSGALG0000003583517
NKX2-8 / NK2 homeobox 8 / Nkx2-9* / O15522* / O70584* / Homeobox protein Nkx-2.8 *ENSGALG0000002848316
NKX2-2 / NK2 homeobox 2 / O95096* / P42586*ENSGALG0000003686916
NKX2-1 / homeobox protein Nkx-2.1 ENSGALG0000003763215


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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